RNA id: TCONS_00018290


Basic Information

Item Value
RNA id TCONS_00018290
length 2588
RNA type mRNA
GC content 0.42
exon number 21
gene id XLOC_009305
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29092527 ~ 29114467 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGTGACGTCGAACAGGATGTGGATTTGCACAGGGAAGTGAGTAATGTGTCTCGCGCAGAAGTTGTAACGTCGTCTACTGGTTCCTCTTAATAATGGCGACTGTCACGACCGAGTCAATGGTGTCGGCAGGACTTACAAGAGTATTTCCGATAGTCATTGTTCTTTTTGTATTAATACCGCCGCTAACAGCGATGTCAGAGCAGGGCAAATGGACCCTGAACGTGAATAATGAAGATATTGGGAAGTCAAAATACTTCTATTATCCGAAGACAATGTTCAATGATACTTACATTACAATAACCTGGCTCAGTGAAGAATGCGGGGGTCCTGTAAAAATCAGTATAGGATGGTATTTGCGAAGTTCTCCTTGCCACAATGAAATTTTTGGATTTAAAtcaGAAAATGCAGAACATTATTTTAGCTCCAGCAATGTACAGTGGGAAGGAGGCACGGGATTCTACATAAGTCACTTGTATGAGCCTATAACTTGTGAATCGAATATTCAGAAAAATAAGCTTGGATTGAAGGTATTTGATCACCCTAAAAAGCTGCAGCCATTACATCCAGTAACCACAGCTGACACAAAAGAAAGACCAAAGAGGGATGCAGAGGACAAAGGACAGACAAAAGAGGCTGCTGCACCAAATTCATCCAATGCCCCCAAAAGCAAAGACACATCAGTGGAAAATTCGTCTAAACCACCTGATGCAGTTGCACGAACCTGGGAAGACAGCCCTTACATGTTCATTATTAAAATTGATGCCGATTCACCTGCAAAAGACACCAAATGGAGCATACAACTGGAGATCAAGATGAAAAGCCGCCATGAATACATATCTGCTTCTGAATGGCCGTTGATGATTTTTTACATGGTGATGTGCATCATCTATGTGATCATGGCAGTGCTGTGGTTGGTTCTCTCGGCTTGTTACTGGAGAGATCTGCTGCGAATTCAGTTCTGGATTGGAGGAGTGATCTTTCTGGGCATGCTTGAGAAAGCGGTCTTCTATGCAGAGTTCCAGAGTATTCGTTATGATGGCCAGTCGGTTCAAGGTGCAATAATGTTTGCAGAGGTGCTTTCGGCTGTGAAAAGAACGCTGGCTCGAGTGCTGGTCATCATTGCTAGCCTTGGATATGGAATAGTCAAGCCGAGACTTGGAGCATTGTTGCACAGAGTGGTCGCTGTAGGATTGCTTTTCCTTATCTTCTCCATCATAGAGGGTGTCCTGAGAGTCAACACGGAGCATGGTGGGCAAACCAGAATGATTTGTGACATAGTAATGGCCCTCATTGATTCATGTATTGTGTGGTGGATCTTCATCAGCCTGGCTCAGACCATGAAGCTCCTTCGGCTGAGGAGAAACGTGGTCAAGCTCTCTATGTACAGACACTTCACCAACACACTCATATTCGCTGTTATAGCTTCTGTTATATTTATCGTCTGGACAGCAAAGACCTTCCACCTAGCCGATTGCAAATCTGACTGGAGAGAGCTGTGGATTGACGATGCCTTCTGGCGCTTCCTGTTCTCCAGTATCCTGCTTGTCATTATGTTCTTATGGAGGCCATCAGCAAACAACCAGAGGTACGCCTTCAGTCCACTGGTGGATGAGATTAGTGAGGAAGAGGAAGAGCAGCTGATGAATGAAGCCTTCGAGGGTGTGAAAATGAGGGGAATGAAACCAGAGACCAATGGAAGTGCAAAACCCAGCAAAGTGgATGAAGATCTCAAGTGGGTTGAGGAAAACATTCCCTCATCAATGGCTGACGTCGCACTGCCGCCACTGCTAGACTCAGACGAGGAGATCATGACCACGAAATTCGAGATGTCCAAAATGGAGTAGATTGATGAAGATGAAGTATGTATTGTATATAATATGTGTACGACAATGCACAACTGCTTTATCCCCAAAACACGAGCTTATCATAAGCGACGTCTGTATATACGTGGGATGATGAGGGTAATGCACTAAaggacttttgttttgtttttttaattgcctgtttgtatatattttttctcagaTAATATGGTGTCAGAGTTTcttaaaaaattactgtaaattgccTTTGACTGTTGTTTACATATCTGCAGTGCAAAATGTGATTAAAACACATTAGTTTGTGCATTGTGCTCTTTCCCTAAGAGGCTTTCGCGCAACAATCCGCTTATTAATCACATAAAGATGGGAAAACATGTAGGATAAAAGCTGTTttctgccttttattttattcgtCAGTGTGCTTTTCACAGATTAGGAGTTACATCTCTGACCTGTTGGTATTTTCAGCAAAAGTGGCCATTAAGTGTCATCTTTCTGCCCTGTAGACCATTATGCAGATTGCCTTTCAGTGGATTTATTTGACGTGAGTTTTTAGTGCTCTCTGTCATAGTTACTAGACACTCGGCTGCATTTGGGTCCAGTTACATGACATGGGGAAATGAGTTTGTCTATCAACATTACCTTAAACAAAAGGCAGAGGTTGTTTTCCACTCCAAACTTTTATTTAAGTCTTTTACAATGAGTTAGCCATAGTATGCGCAATTGTAAGTAttttatagcaaataaaaaaattaccattGAA

Function

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0006810 transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-185 Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and membrane. Orthologous to human TMEM87A (transmembrane protein 87A) and TMEM87B (transmembrane protein 87B).

Ensembl:

ensembl_id ENSDART00000109482

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019191 lncRNA downstream 83468 29005044 ~ 29009059 (-) True XLOC_009303
TCONS_00018288 lncRNA downstream 195602 28891716 ~ 28896925 (-) True XLOC_009302
TCONS_00019188 lncRNA downstream 306934 28726897 ~ 28785593 (-) False XLOC_009298
TCONS_00018295 lncRNA upstream 41613 29156062 ~ 29162253 (-) False XLOC_009306
TCONS_00018298 lncRNA upstream 207771 29322220 ~ 29322866 (-) True XLOC_009307
TCONS_00018303 lncRNA upstream 269266 29383715 ~ 29384612 (-) False XLOC_009309
TCONS_00019192 lncRNA upstream 422035 29536484 ~ 29539166 (-) True XLOC_009312
TCONS_00018309 lncRNA upstream 440875 29555324 ~ 29556737 (-) True XLOC_009313
TCONS_00018289 mRNA downstream 80034 29011290 ~ 29012493 (-) True XLOC_009304
TCONS_00018285 mRNA downstream 184500 28874441 ~ 28908027 (-) False XLOC_009302
TCONS_00018286 mRNA downstream 184500 28879064 ~ 28908027 (-) False XLOC_009302
TCONS_00018287 mRNA downstream 188156 28881138 ~ 28904371 (-) False XLOC_009302
TCONS_00018284 mRNA downstream 232245 28822736 ~ 28860282 (-) True XLOC_009301
TCONS_00018294 mRNA upstream 40098 29154547 ~ 29162261 (-) False XLOC_009306
TCONS_00018296 mRNA upstream 41728 29156177 ~ 29162193 (-) True XLOC_009306
TCONS_00018297 mRNA upstream 207754 29322203 ~ 29326254 (-) False XLOC_009307
TCONS_00018299 mRNA upstream 228831 29343280 ~ 29348212 (-) False XLOC_009308
TCONS_00018300 mRNA upstream 228831 29343280 ~ 29354020 (-) True XLOC_009308
TCONS_00018276 other downstream 357486 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018264 other downstream 716900 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018243 other downstream 1169434 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 1438235 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 1445991 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018305 other upstream 270684 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 555743 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 762825 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018344 other upstream 1729940 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018355 other upstream 1948108 31062557 ~ 31067406 (-) True XLOC_009336

Expression Profile

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