RNA id: TCONS_00018294


Basic Information

Item Value
RNA id TCONS_00018294
length 1410
RNA type mRNA
GC content 0.41
exon number 8
gene id XLOC_009306
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29154547 ~ 29162261 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCCGTCAAAGGATTTATGCTACCTGGTTACTGTGGACCAAATACCTCATGGGCAGGACCTTTGTATCATTTATACTAGATGAGACATAGTGCATGTTAAAAATGTCAAGTGAAGTGTCTGCATTTCTTTATCACAACACATAACAAGATATGTTTATAAATCAGAGATGTTTACGTCACCTGGTAAGTTTCGGTTCCGCTTTCTGTTCTGGATAAGTGAAAGTCCCAAGTCGTCTCACTTTCTAGTTTAAGTATGGACACAGAAGAAGAGCTTGTTTTATGTACTCACTGCAATAAGGATGTAGCCAAGGCAAACTTTGACCTGCACGAACCACACTGCAAGAGGTTTCTGTGTAAATGCCCTGACTGCAATGACACTGTCCATCGAGATCAGCTGGAGGAGCACAAAACTGAACAGCATGCAGAGGTAAAATGTAAGAAGTGCAAGAAAAAGATGGAGCAACGGCACCTGCTAGACCATGAGAAAAATGAATGCCCAGAGAGGTCTGAGATCTGTGAGTTTTGTCAGCTTGAGCTTCCTCTGAGCACTCTGAAAGTGCACAAAGTGTCCTGCGGGAGTCGCACGGAGCGCTGCTCTGACTGTGACCAGTATGTCAAAATGACGGACCAGATTGATCATGCTCAAATCTGCCCCGCTACCACTCAGACAACGTCCAGGGATTTAGTCTCCAAAGATGATTCATCTGACTTAGATGAGGGGACCATGTTGCAGTGTGATAATTGTCTGAAATACATTCCCTCAGCCAGCCTGGAGATACACAAGGGAAATTGCCCCCGTGATTTACAGTATGTAGGCTCTTATGATGATaactatgatgatgatgataataatgatgacaaaaaGCCCAAAGCTGGAAACAACAGTGATTCAGATGCTGCAGAATTCTCGTTCTCATCGCGGCACAAGACAAAGGGAgataaaaacagtgacacagacCTGGAAAAAATAAGCACCTGTCGGCTCTGTCATCTGGCTCTACCTGTAAAGACACTCGAATGGCACGAGaaaagatGTGAATTACACAGACATCTGAGCACGGCTTGATAACTGATGAGAGAAAAGCTAAACTTGGTTGATGGAAACCGCCAATCATCATAATATAATAGTGGACTGTATTGAAATGGAAATGATAGTAACTAAAAATGTTTACAGTCTTTTTATCACAATATTTCTTTTAATAATGGCTCCTTAAAAATGATCAGGCCCAGTGAAGGCAAAATTAcacaaaatgcttttggaaagtTGAGCATGGGTACTGTTTGTATACTTCGATTTCTGACTAATGCTATTTACTCCATTATACATCTGTTGTTCAAATCTGTTGTTAACCTTGTTGAAAAAGTTTAAATctgtttgcatttaaaataaatgaacataagaCAAGCCCA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0007005 mitochondrion organization biological_process
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-840 Predicted to enable zinc ion binding activity. Predicted to act upstream of or within apoptotic process. Orthologous to human XAF1 (XIAP associated factor 1).

Ensembl:

ensembl_id ENSDART00000099885

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019191 lncRNA downstream 145488 29005044 ~ 29009059 (-) True XLOC_009303
TCONS_00018288 lncRNA downstream 257622 28891716 ~ 28896925 (-) True XLOC_009302
TCONS_00019188 lncRNA downstream 368954 28726897 ~ 28785593 (-) False XLOC_009298
TCONS_00018298 lncRNA upstream 159959 29322220 ~ 29322866 (-) True XLOC_009307
TCONS_00018303 lncRNA upstream 221454 29383715 ~ 29384612 (-) False XLOC_009309
TCONS_00019192 lncRNA upstream 374223 29536484 ~ 29539166 (-) True XLOC_009312
TCONS_00018309 lncRNA upstream 393063 29555324 ~ 29556737 (-) True XLOC_009313
TCONS_00018314 lncRNA upstream 487254 29649515 ~ 29651327 (-) False XLOC_009316
TCONS_00018293 mRNA downstream 40080 29093254 ~ 29114467 (-) True XLOC_009305
TCONS_00018291 mRNA downstream 40098 29092527 ~ 29114449 (-) False XLOC_009305
TCONS_00018290 mRNA downstream 40098 29092527 ~ 29114449 (-) False XLOC_009305
TCONS_00018292 mRNA downstream 44927 29092985 ~ 29109620 (-) False XLOC_009305
TCONS_00018289 mRNA downstream 142054 29011290 ~ 29012493 (-) True XLOC_009304
TCONS_00018297 mRNA upstream 159942 29322203 ~ 29326254 (-) False XLOC_009307
TCONS_00018299 mRNA upstream 181019 29343280 ~ 29348212 (-) False XLOC_009308
TCONS_00018300 mRNA upstream 181019 29343280 ~ 29354020 (-) True XLOC_009308
TCONS_00018301 mRNA upstream 220193 29382454 ~ 29388012 (-) False XLOC_009309
TCONS_00018302 mRNA upstream 220943 29383204 ~ 29387503 (-) False XLOC_009309
TCONS_00018276 other downstream 419506 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018264 other downstream 778920 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018243 other downstream 1231454 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 1500255 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 1508011 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018305 other upstream 222872 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 507931 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 715013 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018344 other upstream 1682128 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018355 other upstream 1900296 31062557 ~ 31067406 (-) True XLOC_009336

Expression Profile

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