RNA id: TCONS_00018299


Basic Information

Item Value
RNA id TCONS_00018299
length 2262
RNA type mRNA
GC content 0.40
exon number 2
gene id XLOC_009308
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29343280 ~ 29354020 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATTTCAGCTGCAGTTGAAGAGAACGCTTCTACCTGTGTGACACGAAGGTCTTTTGCCTGCTTTGTAAAGCTTCTGTGTACTTGATGAAAACACcTCACCATGGCGTCTCTGCTGTGCCTCTTCTTCTCTTTGCTTGGCCTGGCTGCCATTGGTGCTGTGAAGAACTGTCATCCGCAGTGTCGGTGTGAAGTGGAGACCTTCGGCCTCTTCGACAGCTTTAGCCTTACCAAAGTGGACTGTAGCAGAATCGGCCCTGGAAACACCCCAGTCCCCATTCCTTTGGACACATCCCATCTGGACCTCTCCCTCAACTCCATCACCTCCATCAGCGACACGATGCTTTCTGGACCGGGTTACACCACCTTAGTCAGTTTGGACCTAAGCAGCAATCTTATTGCGCAAATCAGTCCCAAAGCGTTCTCCAAACTGCGTTACCTTGAGACTTTAGACTTGAGCAGCAATGCTCTCGAAGGTCTCAGCGACGGCTGCTTCACTGGACTCCCTCTAGTTGAGCTAGACCTGAGTGAAAACCAATTCAAAGAGTTCAACCTTGATCTCTTTACCACCAGGACACAGGATTTACCAATAATGGTGGACTTGTCACGAAACCTTCTTACCTCCATTTTTAGGAGAACACCAGGCCATCCGTTGTACATCAAGAGTCTTATGCTTGCAGGGAACCAATTGAAGACGGTGCCGAAACTTAATGGGATTCCACTTCAGTATCTGAACCTGGATGGAAATCTCATCTCTAGCATTGACACAGGAGCCTTTGATTCGCTGACAGAATTGGTTCACCTGTCTCTCAGCGGCCTGTCCGAACTGACCTTGATTCATCCAGGTGCTTTCAGGAGTCTGAAGAACCTGCAGGCTTTAGACTTGTCCAACAATAGCCAACTTAAGACGCTGAACCCTGATGTTTTTAGCGGACTCGTCTCTTTACAAGAGCTGAATTTGTCCAATACTGCTGTCACACCATTATCAAGGACCGTCTTTATGCAGATGCCAAACATAAAGAGTATAACTCTAGGGCCAAACGTGCATTGCTGGAAGACACACAAGCAGGGACAGTTTCACAGGCAGATTGGACAGGCCAAACCCAATGATATACTTACCTGTGACAACGCAGGACTGATCTTATGAGCCTGAAGTGCCAAGGAAAGACTTATTTTCTCATCTCTGTGCCTTAATAATATCTTATAAGACTTTTGTAGTTCAAGATTGCATCGTATTTGCACATTGTTTGCCAACCGAGGTCCACCATTTTACTTGTTCGTCACATTTCAGTATATCGCAATGACTCGTGCACTTTAGTTACCACATTTCTGTTCTTCTACTTAAAGTCAGTTGAGATCTGCAGTGTGTTGTCAGCTCTGATGTGATGtgtttgatttggtttggttCAACACAGAACTTAGTCTTAAAGTTTCTTTAGTTGTGTGTAAATGTACACCAGTTTTGAAGTTATGGTACCATAGATAGTAttcagtttacccaaaaatgaaaagtttgcCATCAATTACTCGCCTTCACTTGTTTTGGACCTGCTtttttatgattatgatgatgatgatcatgatgatgataaagaacacaaaagaagttattttgataaatgttggaAATGTGTAGCCTTTCACTTCTTAAGTGTTTCCTATTAAAGATGTCGATGGCTATCGTTTTCCAGCACtcttcaaaataccttattttgtgccaacagaaaaaagaaattaatgcAGGATTGGAACTACTTAAGTAAATGGTGATGAAATTTCCATTTTTGGTGTAAACTATTCCTTTCAATTTACACCAACACAtaggttgtatttatttattttttattaatttacagtgaacCACAAACATTGAGGGCGATAAGTAAAAGTGTTTTACTCGTTTCAAGTGGAGCTTTTTAATAGAATCACTAAGTTTGAAATCACTATTtggaatttacattttaatgctgaataaaaaaatgtattaatcagttTAGCGTtgcaaactaaaaaataaaatattctctACACATCACTCAGACTGACACTTGAAGGAAATGTAACGTTAACTAGTTCACAACCTTTTAATTCCTAAGTCGTCATTTCACAGACGTTTACATAATATTGCTCTGAAATTTTGCACTTTTGATGTTCTTATAAGATTTGtataaatttttaaaagaaaatgcatgatGGTTGTTCATCATGTGAGATGTTTTACGTTTGTACAAAACTATACTCCTAATAAAAGATAATCAACTTTA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko00535 Proteoglycans

ZFIN:

id description
ZDB-GENE-030131-4683 Predicted to be involved in energy homeostasis and growth plate cartilage chondrocyte development. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including germ ring; margin; mesoderm; pectoral fin bud; and tail bud. Orthologous to human TSKU (tsukushi, small leucine rich proteoglycan).

Ensembl:

ensembl_id ENSDART00000133117

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018298 lncRNA downstream 20414 29322220 ~ 29322866 (-) True XLOC_009307
TCONS_00018295 lncRNA downstream 181027 29156062 ~ 29162253 (-) False XLOC_009306
TCONS_00019191 lncRNA downstream 334221 29005044 ~ 29009059 (-) True XLOC_009303
TCONS_00018288 lncRNA downstream 446355 28891716 ~ 28896925 (-) True XLOC_009302
TCONS_00019190 lncRNA downstream 570706 28758455 ~ 28772574 (-) False XLOC_009300
TCONS_00018303 lncRNA upstream 35503 29383715 ~ 29384612 (-) False XLOC_009309
TCONS_00019192 lncRNA upstream 188272 29536484 ~ 29539166 (-) True XLOC_009312
TCONS_00018309 lncRNA upstream 207112 29555324 ~ 29556737 (-) True XLOC_009313
TCONS_00018314 lncRNA upstream 301303 29649515 ~ 29651327 (-) False XLOC_009316
TCONS_00018315 lncRNA upstream 301303 29649515 ~ 29664699 (-) False XLOC_009316
TCONS_00018297 mRNA downstream 17026 29322203 ~ 29326254 (-) False XLOC_009307
TCONS_00018294 mRNA downstream 181019 29154547 ~ 29162261 (-) False XLOC_009306
TCONS_00018296 mRNA downstream 181087 29156177 ~ 29162193 (-) True XLOC_009306
TCONS_00018293 mRNA downstream 228813 29093254 ~ 29114467 (-) True XLOC_009305
TCONS_00018291 mRNA downstream 228831 29092527 ~ 29114449 (-) False XLOC_009305
TCONS_00018301 mRNA upstream 34242 29382454 ~ 29388012 (-) False XLOC_009309
TCONS_00018302 mRNA upstream 34992 29383204 ~ 29387503 (-) False XLOC_009309
TCONS_00018304 mRNA upstream 36302 29384514 ~ 29387446 (-) False XLOC_009309
TCONS_00018306 mRNA upstream 155260 29503472 ~ 29510074 (-) True XLOC_009310
TCONS_00018307 mRNA upstream 179208 29527420 ~ 29534022 (-) True XLOC_009311
TCONS_00018276 other downstream 608239 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018264 other downstream 967653 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018243 other downstream 1420187 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 1688988 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 1696744 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018305 other upstream 36921 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 321980 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 529062 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018344 other upstream 1496177 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018355 other upstream 1714345 31062557 ~ 31067406 (-) True XLOC_009336

Expression Profile

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