RNA id: TCONS_00018301


Basic Information

Item Value
RNA id TCONS_00018301
length 3295
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_009309
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29382454 ~ 29388012 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCGCAGCCAGAAAAAGAATTCAGTTTGACGTGGCACTGTTGGGGGAGGATGTGAGATGTGGGAACAAGCCTCTGCATCCCCCGACAGAAGAATCTAGAAGGAATGCTGACAAAGACAGACTCAAACTCaatcaataaatcagttattttataCATCCAGAGGTCAATCGTGTGATTTAAAGAGAAACATTATGTTCTTGTGTTAAAATTCATATGCTGTTGTTCAAACCAACTGCCAACTCAGCACTGCAAATGTGAGCTCGACGATAAAACGTTGCATGCTACAAAACATTATCATCCTTCCTTACAAACTTTATGCCAAAACAACACATTTTCACCAGTTTTAATGaaaataacaatagtttgtttgCAAAGTACAGCTGTTTTCAGAAGGCTTTAGGACCTTGCAGAGGTGGTCATTTGATCCAGAGGGAGGGCTTTCTCTGCATCCCCAGGAAATCCAGACATCCTCATTTGAATAGCCCGTGTCCAGCTTCTAGAAGTTTCTTTCCTGGAGTATAAAGGCCTCTGCTTCAAACACAGCAAACCAGCatccaagaagaagaagaagaagaagaaggagaaggagaaaaagaagaagacTACGAAGAAGAAGACGAAAAagacaaagaagaagaagaagaagaagaacatcTGAGAAGAGGAGAGGAAAAAAGAGGAAAACATCCAAACAGCTGTCCAAGGCTTTTCGTATCCAAAAATCCAGCCAGAATGTGGGTATCCAGCCTCATTGCTCTGTGCCTTTTGGCTGTGGCCGTGTCCGGTGAGGACAAAAAGTTGAGCACTCATGCAACCTCCATGGCAGACACCAGCGCCAATCTGGCCTTCAATCTCTACCACAATGTGGCTAAAGAAAAGGGTCTCGAGAACATCCTCATCTCACCTGTGGTGGTGGCATCTTCTCTTGGTATGGTGGCAATGGGAAGCAAGTCCTCCACTGCATCCCAGGTGAAGAGCGTCCTGAAGGCTGACGCTCTGAAAGACGAGCATCTGCATACGGGCTTATCAGAGCTTCTGACTGAGGTCAGTGACCCGCAGACCCGCAATGTGACGTGGAAAATCAGTAACAGGCTGTACGGCCCCAGCTCTGTCAGCTTTGCTGAAGACTTTGTTAAGAACAGCAAGAAGCACTACAACTACGAGCACTCCAAAATCAACTTCCGCGACAAGAGAAGTGCTATTAACTCCATCAATGAGTGGGCCGCCAAGACAACTGATGGAAAGCTGCCAGAAATTACAAAGGATGTGAAAAACACAGACGGGGCTATGATCGTCAATGCTATGTTCTTCAAACCCCACTGGGATGAGaagttccaccacaagatggttGACAACCGTGGTTTCCTGGTGACCCGCTCTCACACAGTCTCTGTCCCAATGATGCATCGCACAGGAATCTACGGCTTCTATGAAGACACGGAGAACAGGTTTCTAATAGTCAGCATGCCTTTGGCGCATAAGAAGTCCAGCATGATTTTCATCATGCCGTACCACGTGGAGCCTCTGGATCGGCTGGAGAATCTTCTCACCCGCCAGCAGCTGGACACCTGGATTAGCAAACTTGAGGAGAGAGCGGTCGCCATCTCTTTGCCCAAAGTGAGCATGGAAGTCAGCCACGACCTTCAGAAACATCTTGGAGAACTCGGTCTCACTGAAGCTGTGGACAAGTCTAAGGCAGATCTGTCCAACATTTCCGGCAAGAAAGACCTTTACCTCTCCAATGTCTTCCATGCCTCCTCCTTGGAGTGGGACACAGAGGGAAACCCATTTGACCCCAGCATTTTCGGCAGTGAGAAGATGAGGAACCCCAAGCTCTTTTACGCCGACCATCCCTTCATTTTCCTTGTGAAAGACAACAAGACCAACTCCATCCTTTTTATTGGCAGGCTAGTTCGCCCTAAGGGTGATAAGATGAGAGATGAATTGTAACTTTTAGGCTATTTGAATGAACTTTtggaaatttattttttattattattttttttcaaactgttattattgtaattaatggTGTTACCTCAGGTGTATGGACAATCTAAGTGAATTTGTCAGTACAAAAGCATTGTTTAAGAAGATAGGTGGTATGTGTCAGGAGCAATGGTAGAAATAAGTGAGATATATTTGAACCGCACAAAAGGACCAGTGGTTTGACATCAATTATGTCATGTGAATTATTCAATTAAACACTATGCTTACATTAAGTGTAGTGTAATTGATGTTGAGCCATGGTGTTATGATATTCATGATAGTGCTTGTAGAACCTCTCTTTATGAGTTTGTAACATCTGGGTAGGGTTGACCTTATCTTTAATGTTTAAAGGGAAAAGGTAATCCTACTCAATTGTTTCTTAAAGCACAGTTTTGTAGGCTCTTTTATTTCACTTTCATCCAACAAAACGAACTGCTGCAGAAATTTCCAGGTTGACAAATGCCATGTTTTGATATGTCTTAATTCTAAAAATGTTTTGAGCAAGTTTTTCCTtctttttgtcatcatttttttcAATAAACTGAAATGGAAAATATCTATAATATCATGtcttttttatacttttaaattatttagaattataaaTAATACATCATTATAAAGGTgctgcggtggcgcagtgggtagccacatcacctcacagcaagaaggttgctagtttgagtctcggctatgtcagttgccatttttgtgtggagtttgcatgttctccccttgttgcgGTGGCTTTCTtccgggcgctccggtttcccccacaagtccaaagacatgcagtataggtgaattagataagctaaattgtccgcagtgtacgTGAGTAAATGAGAGtaaatgaatgtttcccagtggtgggttgcagctggaagggcatcagcagcgtaaaatatgctggataagttggctgtttattccgctgtggtgaccccagattaataaagggactgagccaaaaagaaaatgaatgaatgaatgaatgaatgaatgattgaacataaagaagttgatgttaacatgaaataaaacaaataaaaccaacAAATGGCAGATAAAAGCTCGGTGGCTTGCCTCATAAAAATTGAACTTTGGTAACCACATGGTTTGCACATGGTTTGCACATAATAAATCGTTATTAAAAAAACACTCTGTGGgaatcatttttgtaatttacaagTGAGGCAAAACATTTACCGCCTGATCACCACAcatcacataaataaacaatattgtatTTTCAATTATAAAAAGGGTGAAACTTGATCAATTTGAATActgtttacattattaa

Function

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0030199 collagen fibril organization biological_process
GO:0031101 fin regeneration biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005615 extracellular space cellular_component
GO:0005518 collagen binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-93 Predicted to enable serine-type endopeptidase inhibitor activity. Acts upstream of or within fin regeneration. Predicted to be located in extracellular space. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including ectoderm; fin; germ ring; mesenchyme derived from head mesoderm; and mesoderm. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 10 and preterm premature rupture of the membranes. Orthologous to human SERPINH1 (serpin family H member 1).

Ensembl:

ensembl_id ENSDART00000115032

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018298 lncRNA downstream 59588 29322220 ~ 29322866 (-) True XLOC_009307
TCONS_00018295 lncRNA downstream 220201 29156062 ~ 29162253 (-) False XLOC_009306
TCONS_00019191 lncRNA downstream 373395 29005044 ~ 29009059 (-) True XLOC_009303
TCONS_00018288 lncRNA downstream 485529 28891716 ~ 28896925 (-) True XLOC_009302
TCONS_00019189 lncRNA downstream 609880 28758455 ~ 28772574 (-) True XLOC_009300
TCONS_00019192 lncRNA upstream 148472 29536484 ~ 29539166 (-) True XLOC_009312
TCONS_00018309 lncRNA upstream 167312 29555324 ~ 29556737 (-) True XLOC_009313
TCONS_00018314 lncRNA upstream 261503 29649515 ~ 29651327 (-) False XLOC_009316
TCONS_00018315 lncRNA upstream 261503 29649515 ~ 29664699 (-) False XLOC_009316
TCONS_00018316 lncRNA upstream 264010 29652022 ~ 29667209 (-) True XLOC_009317
TCONS_00018300 mRNA downstream 28434 29343280 ~ 29354020 (-) True XLOC_009308
TCONS_00018299 mRNA downstream 34242 29343280 ~ 29348212 (-) False XLOC_009308
TCONS_00018297 mRNA downstream 56200 29322203 ~ 29326254 (-) False XLOC_009307
TCONS_00018294 mRNA downstream 220193 29154547 ~ 29162261 (-) False XLOC_009306
TCONS_00018296 mRNA downstream 220261 29156177 ~ 29162193 (-) True XLOC_009306
TCONS_00018306 mRNA upstream 115460 29503472 ~ 29510074 (-) True XLOC_009310
TCONS_00018307 mRNA upstream 139408 29527420 ~ 29534022 (-) True XLOC_009311
TCONS_00018308 mRNA upstream 161103 29549115 ~ 29556757 (-) False XLOC_009313
TCONS_00018310 mRNA upstream 176352 29564364 ~ 29586747 (-) False XLOC_009314
TCONS_00018311 mRNA upstream 176362 29564374 ~ 29573267 (-) True XLOC_009314
TCONS_00018276 other downstream 647413 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018264 other downstream 1006827 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018243 other downstream 1459361 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 1728162 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 1735918 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018320 other upstream 282180 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 489262 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018344 other upstream 1456377 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018355 other upstream 1674545 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018367 other upstream 1818426 31206438 ~ 31237395 (-) True XLOC_009339

Expression Profile

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