RNA id: TCONS_00018310


Basic Information

Item Value
RNA id TCONS_00018310
length 2599
RNA type mRNA
GC content 0.44
exon number 16
gene id XLOC_009314
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29564364 ~ 29586747 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCCAGTAAGTAAACAACATGAGCATTAGTGCATTCAGCTCCTGACGGAGGGGCTGCCGGCAGTGGTAATGGTCTCCACATCTATTGGATTACAGGAAGGATGTCATTCAGCGTTAATCTGTGCAGCCTGAAACACTAAGCGCTCTGCTCTCACTCTGCTGCGACTCGTCCCATTGTTCATCCTGCGCTGGAAACAAACCAGACTTTCCAGAATGAATCTTTTCTGCTTCTCTCTGGAAGGCTCTATGGACAGCCTGTATGAGGCGGTGCAGGACTCATGTGAGGCTCAGGTTTACACCATCCCCAGCCGGTCCTGCAGCCCAGCGGTTCTCCTAGAGGACAACACCAAACGGAGGAGTGCAGGACGTTCCTGCTCTATGGAAATGTCACAAATCAACCCAGacaatagaaaaaagaaacaaagATCACTACCAAAATCGGTTTCTGAAAATGACACTTCAGATAACACACTCGGCACTAATTCGGTCTGGCCAGCTGCCAAAAAGCAGGAAGATTTAGTCCTCCTGAGGAACAATCAGAATGAAGATCTGAGGAGAGCTGTAAGGACAGAAAACCAGACAATGGCAAACTTAAAGATCATCGCAAGAAACCCACAGCAAGAGAGCCAGCCAATCCAGGTTGTCTATTATGAAGGGTGTAAGCCAAACCTTGATGGGCTAAGCAGCAGGCAGAATGGCGTGACGGAGACAGTAAATGAAGAGATGATACGAGCAAGAGGAACAAGGGtgaaaaaactagaaaaaaaaagcagtcaAAGAGAAACTCCAACACAAGAGACAACAGATCCTAGTAAAGGTGCCAAAGGAACGATGCCTGATGTAGGGATGTGGTCACAAAATCCGGATATATCTTGTACCTCTGAAGGTTTGAGGGTCAAACAGATTGCAGCATCCAGCAGAAATCGCTGGAGTAACCCCACTGAAAGCACCTGGGTTCAAGCCTACAACCCCTGTCAGCCTCAACTCAGTGAACATCGCATCCACACCTGTGAGTGCACTGCATCCAGAAACAGGAGTCAAGGAGACAAAATCAATGGCCCAAATATGAAGAGAGACTCCTTGCCCAAAGGAATGATGCGCTCCACGACCAGTGTAGATTTCTGTGCCTCTAAACGATCCACAAGTTTTGGAAGATTTGACACATTCAGAAATCAAAACTCTCCTTCCAAGCTTGAGGAAAATGGCACCCCTGAGacagaAGGCGACTCAGCAGCAGACATCAGTGAGAAACCAAGATGTCTGGGGAAAAAGATGAAGGCCATCTCAATGACGATGCGTAAAAGAATGGGCAAGAAACCCGTCAAATCCTGCTCAGAGGATATGGCTGATGACACTGAGGGAGAAACAGAGAATGGATCTGCTGTGGAGAAGAGCTCAGACCGCACCAGCAACTCTTTAGAAAGCCTCTACAGTGGACAGAGCTCATCCAGCTCAGGTGGTGTGGCGAGCAGTTCAGATGTATCCAGTAACAGAGACAGCCTGAAACTGGAGGAGGAAGCGCTCTATACGGGACAGTTCTGTGGGCGAGCCAAAGTACATACAGACTTTGTCCCCAGCCCATACGATACAGATTCCCTCAAACTGAAGgtggGAGACATCATCAGCATTATAAGTAAACCACCGATGGGCATATGgacaggcatgctcaataataaAGTGGGGAACTTCAAGTTTATCTATGTAGATGTTCTACCAGAGAAAGAGAAGGAACAGGAGGAAGAAGCCCCGAAAATAAGACCTATGAAAGTTTGCAAGAAACCACGACCAAATACACTGCTGGAGTTATTAGAACGGCTTCATTTAGAGGAATATGCATCTTCATTACTCCTGAATGGCTACCAGACAGTGGATGACCTCAGACATCTGAAAGAGAGGCATCTGATCGAGCTGAATGTGACTGATCCTGAACACAGACACAGGCTGCTTGCAGCCTCTGACTGCCTCTACGTCACAAACAAGGAGGAAGAGGGCGAGATGAAGGGCGATGACGAGGATGAAGATAATGATGGTCTCAGAGACTCGGGCTGTTTTATTCCAGCGGAGTGTCCTGACTGCTGAGAGACTCTACACTCTAGAAAATAAAACTTcaataaaatgaaactattttaGAAGTGAATGCAGAGAAAAACCTTGTCAACAGTTTTTAAGAAGAACCATTTATTTCTCAGCATgaagtacataataataatttaaacgaCCTTTGCTCACTTTGAAGGACTACTTGTGGAATGAAACggatgttaaaggttcttcaGGAAACCATCCTATAAAGAAGATTTTAACTTATGAGCGTAATGTCTCTCTGCTGATATTACTTAATGTTAAAGCTACAAACAGACACATAACTCAgttcatgttttttctttttgtcataATCTGTTATTCTctcatttacatgtatgtgttttGTATTTGCACATTGATCGATGTAACACCTTTTCCTGTTCAGTGGATGTTTTTTGAATGTGTACCtaactgtgtgtgagagagatgttTTTACTGCTTTTGCAAATGTTTATCGAGCCTGAACTGTAtataatgttataaaaaataaattatttattcttCACGTTTCTTTT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8639 Is expressed in blood; macrophage; and solid lens vesicle. Orthologous to human SAMSN1 (SAM domain, SH3 domain and nuclear localization signals 1).

Ensembl:

ensembl_id ENSDART00000076749

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018309 lncRNA downstream 7627 29555324 ~ 29556737 (-) True XLOC_009313
TCONS_00019192 lncRNA downstream 25198 29536484 ~ 29539166 (-) True XLOC_009312
TCONS_00018303 lncRNA downstream 179752 29383715 ~ 29384612 (-) False XLOC_009309
TCONS_00018298 lncRNA downstream 241498 29322220 ~ 29322866 (-) True XLOC_009307
TCONS_00018295 lncRNA downstream 402111 29156062 ~ 29162253 (-) False XLOC_009306
TCONS_00018314 lncRNA upstream 62768 29649515 ~ 29651327 (-) False XLOC_009316
TCONS_00018315 lncRNA upstream 62768 29649515 ~ 29664699 (-) False XLOC_009316
TCONS_00018316 lncRNA upstream 65275 29652022 ~ 29667209 (-) True XLOC_009317
TCONS_00018317 lncRNA upstream 77260 29664007 ~ 29665812 (-) False XLOC_009316
TCONS_00018318 lncRNA upstream 78115 29664862 ~ 29665812 (-) False XLOC_009316
TCONS_00018308 mRNA downstream 7607 29549115 ~ 29556757 (-) False XLOC_009313
TCONS_00018307 mRNA downstream 30342 29527420 ~ 29534022 (-) True XLOC_009311
TCONS_00018306 mRNA downstream 54290 29503472 ~ 29510074 (-) True XLOC_009310
TCONS_00018301 mRNA downstream 176352 29382454 ~ 29388012 (-) False XLOC_009309
TCONS_00018312 mRNA upstream 6800 29593547 ~ 29598444 (-) False XLOC_009315
TCONS_00018313 mRNA upstream 8972 29595719 ~ 29598679 (-) True XLOC_009315
TCONS_00018326 mRNA upstream 837898 30424645 ~ 30816556 (-) False XLOC_009327
TCONS_00018327 mRNA upstream 838939 30425686 ~ 30505607 (-) False XLOC_009327
TCONS_00018328 mRNA upstream 839128 30425875 ~ 30450898 (-) False XLOC_009327
TCONS_00018305 other downstream 177925 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018276 other downstream 829323 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018264 other downstream 1188737 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018243 other downstream 1641271 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 1910072 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018320 other upstream 83445 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 290527 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018344 other upstream 1257642 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018355 other upstream 1475810 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018367 other upstream 1619691 31206438 ~ 31237395 (-) True XLOC_009339

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000093_00021721_00029528.mRNA True 1141 mRNA 0.45 7 CI01000093 21721 ~ 29528 (-)