RNA id: CI01000154_01186882_01191062.mRNA


Basic Information

Item Value
RNA id CI01000154_01186882_01191062.mRNA
length 771
RNA type mRNA
GC content 0.44
exon number 5
gene id CI01000154_01186882_01191062
representative True

Chromosome Information

Item Value
chromosome id CI01000154
NCBI id null
chromosome length 1600967
location 1186882 ~ 1191062 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATCAGAAGGCTACTTTGTCCACTGCTTTGCACCTACAGATATTCAGCGCATTCCCAAAAATGTAGTGTTTATTATTGACCGGAGTGGCTCCATGTCAGGCAAAAAAATGGAGCAGACTCGTTTGGCAATGCTGAGGATTTTGAGTGACCTTGCAGAGGATGACCACTTCGGATTGATTACATTCAGTGGTCAAATTCAAACCTGGAAACCTGAACTTCTCAAAGCCACTGAAGGAAATGTGAAAGAAGCAAAGACGTTTGTGAAGTGGATTACAAGTGGAGGAAGTGAGAAGAACCCATTGGAGATTCAGAAAAATGTGAAAAAGGCCATTGGTGGAAAATTTCCTTTATACTGTTTGGGTTTTGGGAATAAAGTCAACTTTGAGTTCCTGGAGAAGTTGTCATTGGAAAATAATGGTGATGCTCGCAGGATCTATCAGGATTCTGATGCTGATCAACAACTGCAGGACTTCTACAAGGAAGTGGCCATTCCGCTCTTGACTAATGTCCGACTTAACTACCAAGGAGTGGCCGATTTAACCCAAACCACTTTCAGCCAGTACTACGGCAGTTCTGAGATTATGGTGGCTGGTCAGATCTCTGATAACAGTTTGGACAGTTTTACCACTGAAGTCACTGCATCATCGAAACAAGATGTGGATATATACAGCTTCTACATTAACTCCACGGTCACCAGTCGCTACGCCACAACGGTCATCACAAGCCGTGTGGCGAACTCACTGAATGAATCTCAAGAGATCCAGTTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412534 lncRNA upstream 85042 1101518 ~ 1101840 (+) True G361738
TU412531 lncRNA upstream 86613 1100041 ~ 1100269 (+) True G361735
TU412525 lncRNA upstream 190806 995854 ~ 996076 (+) True G361729
TU412524 lncRNA upstream 191685 994972 ~ 995197 (+) True G361728
TU412522 lncRNA upstream 193284 993387 ~ 993598 (+) True G361726
TU412448 lncRNA downstream 56194 1247256 ~ 1248166 (+) True G361653
TU412475 lncRNA downstream 58007 1249069 ~ 1249454 (+) True G361680
TU412478 lncRNA downstream 58503 1249565 ~ 1250590 (+) True G361683
TU412421 lncRNA downstream 90200 1281262 ~ 1283149 (+) True G361636
TU412466 lncRNA downstream 97501 1288563 ~ 1288912 (+) True G361671
CI01000154_01134763_01169402.mRNA mRNA upstream 17466 1134763 ~ 1169416 (+) True CI01000154_01134763_01169402
CI01000154_01057020_01083988.mRNA mRNA upstream 100826 1056784 ~ 1086056 (+) True CI01000154_01057020_01083988
CI01000154_01001933_01010068.mRNA mRNA upstream 176300 1001894 ~ 1010582 (+) True CI01000154_01001933_01010068
CI01000154_00956115_00973357.mRNA mRNA upstream 213200 955030 ~ 973682 (+) True CI01000154_00956115_00973357
CI01000154_00902311_00907798.mRNA mRNA upstream 278887 902054 ~ 907995 (+) True CI01000154_00902311_00907798
CI01000154_01191290_01198704.mRNA mRNA downstream 228 1191290 ~ 1198707 (+) True CI01000154_01191290_01198704
CI01000154_01223636_01242177.mRNA mRNA downstream 32488 1223550 ~ 1242177 (+) True CI01000154_01223636_01242177
CI01000154_01258168_01258920.mRNA mRNA downstream 66455 1257517 ~ 1258920 (+) False CI01000154_01258168_01258920
CI01000154_01271709_01275181.mRNA mRNA downstream 80400 1271462 ~ 1275353 (+) True CI01000154_01271709_01275181
CI01000154_01327192_01327848.mRNA mRNA downstream 136130 1327192 ~ 1328774 (+) True CI01000154_01327192_01327848
TU412560 other downstream 66309 1263347 ~ 1263886 (+) False G361764
TU412561 other downstream 66309 1263347 ~ 1263886 (+) True G361764

Expression Profile