RNA id: TCONS_00018318


Basic Information

Item Value
RNA id TCONS_00018318
length 337
lncRNA type antisense
GC content 0.43
exon number 2
gene id XLOC_009316
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29649515 ~ 29665812 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATTTTGGATCGTCCTCTACTCACTCTACCACTTTGTTTTTCCTTGCCAGACTTCATTCAAGAAAGAAGCCTGCTACAAGAGAGACAGCGAAAGGGAGCCTCAAAGACATTTTTATTAGGATCTGCTAATCATGAGGGGGCAGACAAAAGAACctgcattttccttcagcttaatatcaggggtcgccacagcgtaaggAACTGGATATTACTTTGGCATGTTTTACatagccttccagctgcaacccagcactgtgaaacacccatacactctcgtatTCACAGACACTTCTACACTATgttcaaattcacctatagcacaagtgtttggactgt

Function

GO:

id name namespace
GO:0000387 spliceosomal snRNP assembly biological_process
GO:0005685 U1 snRNP cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154047

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018315 lncRNA downstream 163 29649515 ~ 29664699 (-) False XLOC_009316
TCONS_00018314 lncRNA downstream 13535 29649515 ~ 29651327 (-) False XLOC_009316
TCONS_00018309 lncRNA downstream 108125 29555324 ~ 29556737 (-) True XLOC_009313
TCONS_00019192 lncRNA downstream 125696 29536484 ~ 29539166 (-) True XLOC_009312
TCONS_00018303 lncRNA downstream 280250 29383715 ~ 29384612 (-) False XLOC_009309
TCONS_00019193 lncRNA upstream 43487 29709299 ~ 29714528 (-) True XLOC_009319
TCONS_00018321 lncRNA upstream 104799 29770611 ~ 29776205 (-) False XLOC_009320
TCONS_00019194 lncRNA upstream 104799 29770611 ~ 29811807 (-) False XLOC_009320
TCONS_00019195 lncRNA upstream 104799 29770611 ~ 29820800 (-) True XLOC_009320
TCONS_00018323 lncRNA upstream 220611 29886423 ~ 30117669 (-) False XLOC_009322
TCONS_00018313 mRNA downstream 66183 29595719 ~ 29598679 (-) True XLOC_009315
TCONS_00018312 mRNA downstream 66418 29593547 ~ 29598444 (-) False XLOC_009315
TCONS_00018310 mRNA downstream 78115 29564364 ~ 29586747 (-) False XLOC_009314
TCONS_00018311 mRNA downstream 91595 29564374 ~ 29573267 (-) True XLOC_009314
TCONS_00018308 mRNA downstream 108105 29549115 ~ 29556757 (-) False XLOC_009313
TCONS_00018326 mRNA upstream 758833 30424645 ~ 30816556 (-) False XLOC_009327
TCONS_00018327 mRNA upstream 759874 30425686 ~ 30505607 (-) False XLOC_009327
TCONS_00018328 mRNA upstream 760063 30425875 ~ 30450898 (-) False XLOC_009327
TCONS_00018329 mRNA upstream 760340 30426152 ~ 30815826 (-) False XLOC_009327
TCONS_00018330 mRNA upstream 769812 30435624 ~ 30714142 (-) False XLOC_009327
TCONS_00018305 other downstream 278423 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018276 other downstream 929821 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018264 other downstream 1289235 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018243 other downstream 1741769 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 2010570 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018320 other upstream 4380 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 211462 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018344 other upstream 1178577 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018355 other upstream 1396745 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018367 other upstream 1540626 31206438 ~ 31237395 (-) True XLOC_009339

Expression Profile

//