RNA id: TCONS_00018321


Basic Information

Item Value
RNA id TCONS_00018321
length 5254
lncRNA type antisense
GC content 0.33
exon number 2
gene id XLOC_009320
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29770611 ~ 29820800 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTCCCTCTAAGCAGGTGAACCGAGCTCAAGACTTTCCCACGATCCCTCAGTAAATCTGTCTTTGCTCTGCCCCTTTCCTCTGTCCCAGCCATCTGTCTGTTTTTCAGAGCGCGTCTGCTGGAGCGAATGTCAGCTGCGGGGACAAGTCCAGCATTCCCAAACACATCTCACCACAACATTTAGccacaaatacaaatattttgctCCACAAATGAAGACTGCGTTACTAAAAATGCTGGAATGCTAAATTCTTTCTCTCCGTCTTTCTTTAACAGAAACCTATGGTTTTCCAGGCAGACCAAGACAGCGAAATTGACAAAGCCAATGCACGTATCATTAGAGTGCTGAAAGCAGCGCGCCTGGTGCCGCGGGTCTCCTCCTGCGCTGCCTTCCCTCCAAACGCATGACATTGGCTGGCTGAGAGCATGAGAACGGAGCCTTTTCAATAGCAGGATCCTCATACTTGGCCAGTAACCATGGAAGCAGATGCCTACTCACTTTGCCCTCCTTACCTCCTTGCTCCCTCATTGAAAAGGAGGGCACGCCTCGCTTTCTTCTTCCTGACCGAACTTGCCTGGCCCTCAAAGGGAGCGATTGAGCAGGTCACCGGTCTAGACTTGTTTGCATGGTCCGTGGAGCAGTCTTGAGGTAACCCTTGCTCCCCGCCCGTCGCACCGGCACAGACTGCAGGGGGGGACCATCGGAGATGCGAATTTGAAAAGGAGCCCTGTCCGATTTTGCCTTTGTGCCTTTTCCCTCATCGATCGGCTGAATATCGAACCctctgtctgtgcatgtgtgaaaCGGATAGCTTAGTAAGCATTTTTTCTAATCAAGCTTGCGTTGTGGGCCAACTCTCTCGTTTTTCTCTCCCGCTCTCGAACCCTCCCTCTCTCCTCTctcttttttcttcctttctttctccaTTTCTCTCTCACTTTCTGCGTTTTGGCACTTTCTGTGTTTTGATTATCTTGGACGTTTGGCATGTTGCGATGCTTCTGATCagtgtctcttttttttaatctgtggaTTTTGCATGCTGCTTTCTCTGTTTGCTTTTCGATTTCAACTGGGATCAAATAGAGGGACGTTTCAGACTATTTATACCAAAAACTGGCTGCTGCTTTGCTTTTAAttcatcatgtttttttcttaaaaactaaaaaaaatgtaacaatttttatGTGAAAATACTGGTGTGTCTCATAAGGTGAGTATAATTACGTTCTTATGTATTAGATCTGAAATAAACAGTTAGTGTAAAAGattcaattaaaaaagaaaaatcaaatctCTTTTCTCCTGTTTCCTGATATATGTGCTCTAACTGAAATATTTATGTTGAGTTTTCTGACATTAAAGCTGCAAGTCTTTGAACTTAAACATGTCTTTTGGCACTGTGACGTGCTGCAATTATTGTGGGATTATTCGGCTTAAACTGTTCATTTTGCGAGGAGATTTGAGATGTAAGAAGTAATACATTTTCACTTACAGTATGTCAAACAACATTGTATTAGACTTCCTAAATATTAATGCAAGAACATTTATTTCGATTAGATTTTTTAGGCTGTTTCTGAAGGAAGTGActgttacaaaagaaaaaaaacattaagtgaaacatttaaaagattattattaaattaattgaagataattaatttattttatgattaatttactgtgatgaacatatttatttattaaagccaCTATATAGAGAAAACAGCATATCAATattgatcattttttttattgttagtgGCATAGAAATGAATAGAATTGTTAAATTcttgaaaataatgaaaatttttgcaaatattaaaatgaatcaaaatattattattatggtgcaatattattttaaaagaataagACTGTATTATTAGCCTTTGTTTAAGTTGTAATgaaatcttataaaaaaaaaaacaccttaaaaagagtttataagaaatattaaaaaaaaacatttttaatgaaacaaattagCAATGATATAATCTTGCTCCTTGGTTCCTAAGATATCACATATTCCCAATATATTCTGTAATATTTGAACGTATATTCCAATACACAATACTTTAAAGGGCAATAAAATGTCAGTGAAattgcataataaaaataaaaagcatttaaatgaaaaactatgatattcttaatttttaaatcatcacatatttcctaaatattaatttatttgaattatagcATTATGGTCCAAGAAATTTCATACAAACTCTTTTATTTATCGTATCAACGTTTTTAATGTCCTTTCGCCCCTTTTTTCCTGCTCAATTAATTTTCGGTGAAGGATTGAGAATGCACCAGACTGGGTGTTTAAGGGTGCAGAAGTGGGGATTTTTTTTGGAGAACTGTGATTGGATGGAGCCTCACGCAGTGAACCACACGCGCCATGTCAGTAGCTGACAGTGAGGTCACAGAAAATGGAAGCTCAAGGTCTGAGTTCAGTCTGGAAATTACCCACTGTCTGATTCCACTTACTGACTATTGTCATAAAAATACAGGCCTTGTCCCATTTAAATGCACAAACATTAAAAGTAATTGGTCATCTATTTCCAGTCCGTGCATTTTGAACAGCTGCTCAGAAGACAGAGCATTTTTGTTctctattttaaacacatttattttgtgttgtaattACGAGCCTTTTGAACATATATTTCACTTATTATGTTCttaaatgttttacattaaaaactctTAATCTTATTCAATTAAGGTTTCAAAAATATTTCGTTAAAAGTGATGCAATAAATAGGCAATTTTTGTTATCTAAATAGCCTTTCATTTAAGATCGTTTTGCTTTccatttttaataatcattttgaaaatgttaaaggtTCTTTATGGAACAACCAATGCCAATAAGGAATCTTCAGTCCTCAGTCTTCTTACAGACCAAATGTATGAATGCATTCAAATCATCAATCAGTTATCTGTAgaattaatgatttaaaataatacatttattttatgattcatTTACAGTGTCGGAATGAGTTTAATATTAAAGTCAGTATATATGGAAGTATATGATTTAAAATTGATATCTATGGTATTATAAAAAACATACTAAATagcaatttcaaataaataatcatttgtgttaatgtattttgtatattaataaacaatttatgaCAACACAAATACAGATGTATAAATATTTTCAAGCCAAATCAACCAaatctacattttattttaaatctgcacTCAGAATCtattaaaaagtgtttttctttttcttttaaataaaaaggcACAATTATATACTCAGTCAAAATCATTATAAGACaacattttgattatttaaagTAGTCTTCTATGCACgaaaataacaaattaacaaactacATAGAGATAAACACTAGATCTGCTCATCAGTCAATGTGATCCAGCCAGCGAGCTTCACTATAATGCAATTATGTGACTTGTGGTATGCATTGAACAGCCCGGTTCAGAAGTGTTGTTAGCTATGTATATGTCAGTGTTCTGACTTTGAGACAGCAGTTCAATATGTTCGTTCGCCTCACCCGAACGTGAGACTCACAATAGACAATAAGGCCAAGACCAGCTGTGATTTTTCTGTTGATCTCGCTCTATGCATTATTTATAGTCACATCAGAAGATTAGGCTGAAAGCTTGACCCTCGCGCATGACATTGTCTCCAGCCCATTCACGTTCTGGTCAGTGCTAACAAATGATAACCGCAAATGTCCACCAATAATCCCACTGCTTTGGCCTCATGCCTTTTAAGAATTGAGTTTTAATCAGTCTGTTTATTTCACACCGCTATATATGTATATTGttttgataattattttaaatggtgGATTACAGTATATTATGCTTAAGATAAAATATcgaattaaatgtattaaaattcaaaaatgctttttagaaataatataaaaatagattTGATACTCTTAAAATGACAAAGAATATAATGCCAACAGTAGGTTGAGaggaaatattttgtttaaaacaaattacaaaacaataatgttaataataatataaaattaaaataacagcaCTTTTCACCCTGTCATGCAACAATGAAATATTCAGCATATAGTAATagtttttagttgtttgtttttatttcactatGCCACATTTtccttgttttaattaaacatgCACTGAATAAAGTTCAGTTTGTATCTCATAACCTTGCgtttttctcattttattgcCTGCATTTCTTGTTTttcaacacaaaaacacaatctGTGTGGACAGCCCAGTATATTTAAGCGAATCCCACTGGAagatttacttgtttgtttgtttgtttatttatttatttatttatttatttatgttttatttaattagttagtaTAAAAATTGACAGGTTTTAGAAAGCAAAAAAACTGTTCTTGTACAGTGGAAAAAGGAAACGTTTGATAATCTTGCTCTTGAAAAATTAACATGTAATTAGAGGTAAAGCAGAGACTTTTGAAGAAGTGTGGTCTCCTTCTGGTCACTTTATAATTGGACAGATGAAAATAGATGTCTTTGGAACGAggactttaatttaaaattaaatgtaataatgtttgttttgtattattaaatatatacgcCCACACACACTGGTCAATATAtatgattttattgttttgtattttatttttataatttattttaaatgttatttttgtttaacaaGTGTTGGGCTGGGAAAGTACATTCTGAAATATTATATAAGTTAACATGCTTTATTGTTTGCTGGgctttgtaatataattaaatcaataaaaacaaacttgatatatacatatatatatataattcatacaATTATTTTACTAATTCAACTAATTTACCAATGCTTTCTTCATAATtcagcatttaaaataaaaaataaattacagggGTGGAAAAGCATCCACTTTTTTGTGTATTGTACATCAAGAAGTCCTTAAATAAACAAGAGATAACAGTTTCTGTCCTCCTTTGAGGAAGCAACACAAAAAGATTCCCTGAGCTAACAAACAGCATTATCTGTTTAATTGCCTGAGAACTGTTAAATAGCCTCTATTTACATGACAAGATGCAGCTTGTTGTGAAGTGTGACATAAACGAGCCGATAGACAAAAGATGACGGCCGGTCACCACCGCCCCTGCACCCCCCAAAGGCAGAGTCCGGCTCATGAATGACACACACCGAAACaagcaaacatacacacacacacacgcacacacacacacacactgac

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:1990399 epithelium regeneration biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0002065 columnar/cuboidal epithelial cell differentiation biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0043696 dedifferentiation biological_process
GO:0043697 cell dedifferentiation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:0048934 peripheral nervous system neuron differentiation biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060284 regulation of cell development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060290 transdifferentiation biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0003310 pancreatic A cell differentiation biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0005901 caveola cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154022

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019193 lncRNA downstream 56083 29709299 ~ 29714528 (-) True XLOC_009319
TCONS_00018316 lncRNA downstream 103402 29652022 ~ 29667209 (-) True XLOC_009317
TCONS_00018317 lncRNA downstream 104799 29664007 ~ 29665812 (-) False XLOC_009316
TCONS_00018318 lncRNA downstream 104799 29664862 ~ 29665812 (-) False XLOC_009316
TCONS_00018319 lncRNA downstream 104799 29664955 ~ 29665812 (-) True XLOC_009316
TCONS_00018323 lncRNA upstream 110218 29886423 ~ 30117669 (-) False XLOC_009322
TCONS_00019196 lncRNA upstream 217888 29994093 ~ 30128291 (-) False XLOC_009322
TCONS_00018324 lncRNA upstream 245447 30021652 ~ 30129765 (-) False XLOC_009322
TCONS_00019197 lncRNA upstream 270340 30046545 ~ 30128291 (-) False XLOC_009322
TCONS_00018325 lncRNA upstream 332592 30108797 ~ 30127837 (-) False XLOC_009322
TCONS_00018313 mRNA downstream 171932 29595719 ~ 29598679 (-) True XLOC_009315
TCONS_00018312 mRNA downstream 172167 29593547 ~ 29598444 (-) False XLOC_009315
TCONS_00018310 mRNA downstream 183864 29564364 ~ 29586747 (-) False XLOC_009314
TCONS_00018311 mRNA downstream 197344 29564374 ~ 29573267 (-) True XLOC_009314
TCONS_00018308 mRNA downstream 213854 29549115 ~ 29556757 (-) False XLOC_009313
TCONS_00018326 mRNA upstream 648440 30424645 ~ 30816556 (-) False XLOC_009327
TCONS_00018327 mRNA upstream 649481 30425686 ~ 30505607 (-) False XLOC_009327
TCONS_00018328 mRNA upstream 649670 30425875 ~ 30450898 (-) False XLOC_009327
TCONS_00018329 mRNA upstream 649947 30426152 ~ 30815826 (-) False XLOC_009327
TCONS_00018330 mRNA upstream 659419 30435624 ~ 30714142 (-) False XLOC_009327
TCONS_00018320 other downstream 100305 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018305 other downstream 384172 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018276 other downstream 1035570 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018264 other downstream 1394984 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018243 other downstream 1847518 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018322 other upstream 101069 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018344 other upstream 1068184 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018355 other upstream 1286352 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018367 other upstream 1430233 31206438 ~ 31237395 (-) True XLOC_009339
TCONS_00018370 other upstream 1523358 31299563 ~ 31299678 (-) True XLOC_009342

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU349400 True 2462 lncRNA 0.44 3 CI01000093 149578 ~ 156347 (-)