RNA id: TCONS_00019196


Basic Information

Item Value
RNA id TCONS_00019196
length 809
lncRNA type antisense_over
GC content 0.49
exon number 4
gene id XLOC_009322
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29886423 ~ 30129765 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAAATGTTAATTGTTTGAAATTGATTATGTGGGTGTACACGCAGACTCGCGCACGTTGGCCGTTTATGTATAGGATTTTCCGACTGCTTCTATTTAGGGTTCTGGAACGTTTGTGTTTGAACGGGTATAGAATTTTCCGTCGCGTTCTATTCAGGCCACTTGGTGCCGAGTTGGAATCAGCGGTAAGCGCGAGCCCAGTCTCTGCCAGGCCCACTCACATGACTGTCAAAGAGCAATAGGCCTCGTTTCCAGCTAAACTGCAGAAACAAACACCCCTCAGCAACACTAATAATGACCCGGGCATCAAAAGCGAACAGAGCTAACGACGCTCTCCAAACAGTTTGGCCAAAACATTCGGTTTTGCAAGATAAACGGGTAGCGGTGAAGTTTCTGAGATTTGGCCGTCCATCATGGCGGACAGGAAATAACAGAACAAGCTTAAGCTACGAGCAGGAACATTCCACAGGAGCCGGTTCATGTTGCTGTGGCAGCGACGGGGCAGAGCTAACTGGCTATGCTGATTTCTGATGGACGCTTTGCTCTTTAAAACGGCCCAAATGGAGAGATGGAGCACAGGCCGCCAGTGCTGTGGATGGTGAGTcagggaataaaaaaaaagatcagcCCATCCTCCCCTTACGAGACACAACACCCATCTTTAACATAACCTCATCAAACCTCCAGCAGCCGTGCCAACTAGCAAGGgaAAAAGCATCCAGGCATCCAGGACAAACACGAGTACATGAGCATCCTCAGGACTGTTTGCTGAGGCTGGGGATTAAAAGCTTTCCCCACAGGACTACCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019195 lncRNA downstream 173293 29770611 ~ 29820800 (-) True XLOC_009320
TCONS_00019194 lncRNA downstream 182286 29770611 ~ 29811807 (-) False XLOC_009320
TCONS_00018321 lncRNA downstream 217888 29770611 ~ 29776205 (-) False XLOC_009320
TCONS_00019193 lncRNA downstream 279565 29709299 ~ 29714528 (-) True XLOC_009319
TCONS_00018319 lncRNA downstream 328281 29664955 ~ 29665812 (-) True XLOC_009316
TCONS_00019201 lncRNA upstream 28633 30156924 ~ 30158675 (-) True XLOC_009323
TCONS_00019202 lncRNA upstream 172489 30300780 ~ 30305800 (-) True XLOC_009324
TCONS_00018831 lncRNA upstream 188437 30316728 ~ 30318051 (-) False XLOC_009325
TCONS_00018832 lncRNA upstream 188437 30316728 ~ 30322214 (-) True XLOC_009325
TCONS_00018833 lncRNA upstream 231039 30359330 ~ 30361414 (-) True XLOC_009326
TCONS_00018313 mRNA downstream 395414 29595719 ~ 29598679 (-) True XLOC_009315
TCONS_00018312 mRNA downstream 395649 29593547 ~ 29598444 (-) False XLOC_009315
TCONS_00018310 mRNA downstream 407346 29564364 ~ 29586747 (-) False XLOC_009314
TCONS_00018311 mRNA downstream 420826 29564374 ~ 29573267 (-) True XLOC_009314
TCONS_00018308 mRNA downstream 437336 29549115 ~ 29556757 (-) False XLOC_009313
TCONS_00018326 mRNA upstream 296354 30424645 ~ 30816556 (-) False XLOC_009327
TCONS_00018327 mRNA upstream 297395 30425686 ~ 30505607 (-) False XLOC_009327
TCONS_00018328 mRNA upstream 297584 30425875 ~ 30450898 (-) False XLOC_009327
TCONS_00018329 mRNA upstream 297861 30426152 ~ 30815826 (-) False XLOC_009327
TCONS_00018330 mRNA upstream 307333 30435624 ~ 30714142 (-) False XLOC_009327
TCONS_00018322 other downstream 116705 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018320 other downstream 323787 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018305 other downstream 607654 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018276 other downstream 1259052 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018264 other downstream 1618466 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018344 other upstream 716098 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018355 other upstream 934266 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018367 other upstream 1078147 31206438 ~ 31237395 (-) True XLOC_009339
TCONS_00018370 other upstream 1171272 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018372 other upstream 1186918 31315209 ~ 31315548 (-) True XLOC_009344

Expression Profile

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