RNA id: TCONS_00019202


Basic Information

Item Value
RNA id TCONS_00019202
length 4501
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id XLOC_009324
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 30300780 ~ 30305800 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAGTTTTTAAATGTCAACATTTAATGAGCTTCACCACTGTACTTCAAATCTACACTCTGAAAAGAGACCGGTGATTCAAAACACAGAACAAATCCACAGAGTTCTTCCGGTCCCTAACAATCACCTCTGCTTTCAGGGCATCGAATGCGAATTATATTATAGCCATATATGTcataaaatgtattgaaatacCATTAACTCTGAGTATAAACTTCCTTATAAAAACTCAAGAGCAAGTGCAGTACCTTCTTCATTTGGCCCAATTGTTTGTCTCTTTTCACAGGCTCCAATCGGTTTGAATTATCTTAGGTACGACTGCTTTTTACCTCCTTTGCCACTTATTTTATAAGCCTATCTCATCTGACGTCTCTTGGTGAAGGATACCATGTTAATCATCGTGGGTTGTCTGTATGGGATCTAACAGTCAGAGAACACTGGGGTGAAAACATGGTACTTTGTACAAGGATATGATGATGGGAACCACCTCCAACCAATCGCAATTGAATGACTGATTTCTTTATACAGGGTTTGAGAGGAATATAAAAGTCGGAAGGGACATTCAAGTTTTAAATCtccacataaaaataaaagcgtGGAGGTAAACAACCAAGTCATTGAGCTCAAGAGGTAGAGACCAACAATGTGAAtccattatatacatatacacaaacagtTCAGTGTTTCTTTAAAGGAaattaatcataatattaatcataataataatgaaaaaagggCTCTACTTCAATACTTATATCCACAGCTCTGCAGCACACAAGACACAATTAACATAATTGGTTATGTgttttttgttggtttttgtACTTATACTGTTTTGGATTATTCCTTTGTCTACACTCTCTTGTGCAGGGgggaaataaaaagaagaaaagaggaaacaaaaatatatgtacatttatatgcaagtctcaaaaataaaatcaaatttcaCAGCCCTAAAAAATGTGCAGGCTAATTCAACTTCTATACAgcagtattacattttttttgttgttgtttggcgAGTTTTTATACGtcactttttttttgtagatttttcgTTTGTATTGAAATCTACCTGCTACTCACTTATTTACATACCATACTCAGTGGATCATGGGAAAGCATGCCATAGCACCTGTAAGATTTCTGGACACAAAGCTTCCTTCGCCCTTTGCCATTTAGATACAGCAATTTCTCCTTGCATGCTTTGGATCCGCAATGGCCCATTCCCAAATGACACCCTAAACTCTTTAGGTCTTCATCTGTGTCCGAACTACAAGCAACATTGTGACACAATAACAGCtatcttttccatgttaaaaagagtttttgtcctaaccgaCCTGCAAAGTTcctatttaagtttttatttcagTGATGTCACTGCTGAACAACAGCATAATCTACTGAGATTGAACACCTCAGGTGCtttgttcagtgttaaatgcaaCCAATGTGAATTTGAATCCCATTTTACATCCCATTTATAGCCATACTGAAAGCATAAGCAGATAATTAAcctcaaatatttaaaataagttaactAATTACGTTAGAACTGTGACTATAAACAAACATCAGTCACTCGGCTTAtacttttattaatgttaaagatatgtaatatgtattaattagattataaaccttaacaTTTAATTGGGATGCAGTGCACTACTATATGTTTCTGAATTGCTCTGGTATTTAAGTTTTTCAGTCATGGTGCGTCCTATGAGGACAGACCAATTGCTTGTCGCTTTAATCTTGTCATGTCACGTGTTGTTAGCACACGGCGTTCCTCCGAGACCACATTTTATTGATGTAATGCTGCCTTGACTGTTGGGTAGAAGTTCTGTAGTAACCAGAAGTTCACAAAAGGTGCATAGCAGTTTATGAGCACTCTATTGAAAGCTAAAATGATGACTTGGACACCAGCTTGTAGACCAGGCAGTTCTCAAGACCACAAGTGCACAtgcagtgtgccatttgggatagGGCCATTGCTTCTGAGTTGCTGTGCTGTTCAGTTACCCATCCCAAGTACTAAATACTGACACAACACAACCACATTCAGGAGTACTAAGACAAGCCTACCAATCAGTATCACTGCCGAACGCTGCGCTAAGGAATACTGATCTTTTTCACTGACAAAAGTTGAATATGAGACAGAAAGTGAGatatgaacaaatatatatagatagagaAAGGAAGAGCGCAGATGACAGCAAAAACGGAAGAAAGTCATTCAAAATCAAAGCTAATAAACACAATGAGAACTTACTCTGGCTGAACGAGTAGTCACAGTTCTTACATTGTTAAAATTCACAAGGCCCAGGACAAATTTATATAAGGGTGGACCTAAGGGTCCTGACACACCAAGCTGTGGCCAGATAACTAGCAGTATTGAAAGCTGACTGTGGCCACCCTCAAGTTTGGGGTTAATTTTGACACAATGCAAAAGACTACAgccaatggccaatcagtgtgAGAGGAAATACATGTCTATATCAGCAGGCATCAATAGTATCCCAAATGGCACTCTAAAATCTTGTGGTAGACCACACGGGTCTGCTTGAAGCTCACCTCAGTGCAAGTGTGACAGAAATGCGCATAGCATGTGCTCAGAGCCCCCTTCTGTAAGCTAAACCGATGGTTAGGACACCCTCCGGTCTTGCGGACTTCACAGACAAGTGCACATGGCGGTCACTAAATGTCTGCAAGCCCACAAGCTCACATGAAGTGTGCCGTTTGGGATTGGGCCAATGTTCAGAGACACTGTGCCATACAGTCACCCATCTGCAGCACTAAATATTGACACAACACATTCACATTCAGGAGTACTAAAAGAAGCCTTTGAATCAGTTCCTCTGCCAAGTGCTGCGCTATGGTATACTGATTTTTCTTTTACTCGCAAAAACTAAACATGAGatgaaaacaaaatcaatacAGATTTCTAACAAAAGGCTACGGACAAAAGAGAAAATGGAGGAATCTCTtctattacataaaaaataaagcaaataaacacaatGAGTAGCTCGAACTAGTAAAATGAGTGGTTAAACTTCTTGTAAGCGCCATTGCTAAAATTTACAAGGCCCAGTACAACTTGATACGGACCTGACACACCAAGTGACACCAGAAAACTAAGGATGGCAAAAGCCAGCAATAGCTTCACCTTGAGTTAGTGTGTGTGAAAACACTACAAAGACTGCAACCAATGGCCTAATAGCAGGTTTGATCTGTGCCTGAGTGAGAGGAAATAACTGTCTATACATCAGCAGGATTCAATAGTCTATGGCTCAATAACAGTTGGCATCCTAAACTCTTGCTGTCCACAATTGTCGCTATTTGAAAGCTAAAAATATGCTAGATGCCAACAGCAGTGTACTGAATGTAGGGGGAAATGGAGGGCATAGGGTCTAGAGGCCCACAACAGTAAAGTCCCATGACTGAAATCTTTAGCAAAGGGTCCCAGAGCCCAAACCTGTGCATATAATCTCCTAGCAATGCCACAGATTGGGTCACGTTGCGGTCTTGTGGACTTTCACTGACAATAGTCTGCATTATAAAGTGCCATTAGTAGTCAAATAGTGCACATAATGTGTgccatattttcaatataaacaaTGTAATGATCACTTTGCTCATTCCAGACTCTTTCTGTCATTACAAATATATCTGTGATTAGGTAAGATGACCTAAATACCTTATAAGAGCCTTCTCTCTGTGCCTTTTTAAATTCTTTGTTCATTTTCATCACTTTGGCTTTTATTAATGACTCCTGAATTAGCTATGACTCCTCTTCAAAactgaacagccaatcagagtcttcTCTCTCACTGATGGCACAGATTGCGCTTCAGCATTCTCAATTGGCCAGAAAGTCCCCTAACAGGTCGGACTAACTCCACTCTAGAAAAACATAACTGACCAATGGATGGCAAGACGTTGACCGGAAACCAAGATTTGGCTTGGTGTGTCAGGGATATTTCCTGTCCCACCCTATACCACGGCCCTGTTTCTTTCTAAGGTGCTATCGCGAGCGAAAAAACTTCAGACTTAAGAAAAACTTGCCTTCTTTTCGATACTACATGATGCACTGCACTTCTTGTTTCCGTGAATAAATAAAGCATGATTACTCGCACACATAGTCGTGATGAGTTTTCCTTCAGGGATACTGCACAGATTCTGCCGCCCTGCTCTTCAATACATTCAAGTCCACAGGGATCGACTTTATCTGCCGAAAGTACAGGTTCGAGAGCTTTCCGAACCTTCAGTTTACTACTACAGAGCAGTGGGTATGAACGAACGGACCCCCCAGGACCACGCCCACCCTTCCCTTGTCCCGCTTGAACTCATCAGCAGTGGTTGCCTCTATAAAACTCCATTTAGTAAGtattacagtacacacacacaaatatcagCAACATTGGCTAGTCCTAGACTCCAGTGAAATGCTACGCAGGTTTGGGGATGCCTGGGGGTCAGTAGTCCGGAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019201 lncRNA downstream 142105 30156924 ~ 30158675 (-) True XLOC_009323
TCONS_00018324 lncRNA downstream 171015 30021652 ~ 30129765 (-) False XLOC_009322
TCONS_00019196 lncRNA downstream 172489 29994093 ~ 30128291 (-) False XLOC_009322
TCONS_00019197 lncRNA downstream 172489 30046545 ~ 30128291 (-) False XLOC_009322
TCONS_00019200 lncRNA downstream 172489 30117328 ~ 30128291 (-) True XLOC_009322
TCONS_00018831 lncRNA upstream 10928 30316728 ~ 30318051 (-) False XLOC_009325
TCONS_00018832 lncRNA upstream 10928 30316728 ~ 30322214 (-) True XLOC_009325
TCONS_00018833 lncRNA upstream 53530 30359330 ~ 30361414 (-) True XLOC_009326
TCONS_00018335 lncRNA upstream 304188 30609988 ~ 30816474 (-) False XLOC_009327
TCONS_00018339 lncRNA upstream 508266 30814066 ~ 30816507 (-) False XLOC_009327
TCONS_00018313 mRNA downstream 702101 29595719 ~ 29598679 (-) True XLOC_009315
TCONS_00018312 mRNA downstream 702336 29593547 ~ 29598444 (-) False XLOC_009315
TCONS_00018310 mRNA downstream 714033 29564364 ~ 29586747 (-) False XLOC_009314
TCONS_00018311 mRNA downstream 727513 29564374 ~ 29573267 (-) True XLOC_009314
TCONS_00018308 mRNA downstream 744023 29549115 ~ 29556757 (-) False XLOC_009313
TCONS_00018326 mRNA upstream 118845 30424645 ~ 30816556 (-) False XLOC_009327
TCONS_00018327 mRNA upstream 119886 30425686 ~ 30505607 (-) False XLOC_009327
TCONS_00018328 mRNA upstream 120075 30425875 ~ 30450898 (-) False XLOC_009327
TCONS_00018329 mRNA upstream 120352 30426152 ~ 30815826 (-) False XLOC_009327
TCONS_00018330 mRNA upstream 129824 30435624 ~ 30714142 (-) False XLOC_009327
TCONS_00018322 other downstream 423392 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018320 other downstream 630474 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018305 other downstream 914341 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018276 other downstream 1565739 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018264 other downstream 1925153 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018344 other upstream 538589 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018355 other upstream 756757 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018367 other upstream 900638 31206438 ~ 31237395 (-) True XLOC_009339
TCONS_00018370 other upstream 993763 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018372 other upstream 1009409 31315209 ~ 31315548 (-) True XLOC_009344

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU349594 True 2866 lncRNA 0.41 2 CI01000093 496314 ~ 499206 (-)
eurasian perch (Perca fluviatilis) TU3210 True 825 lncRNA 0.46 1 NC_053112.1 6803930 ~ 6804754 (-)
bowfin (Amia calva) AMCG00005508 True 1328 mRNA 0.53 11 CM030142.1 3229689 ~ 3256106 (+)
mexican tetra (Astyanax mexicanus) TU3210 False 3076 lncRNA 0.33 2 NC_035897.1 8953904 ~ 8957005 (-)