RNA id: TCONS_00018328


Basic Information

Item Value
RNA id TCONS_00018328
length 617
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_009327
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 30424645 ~ 30832897 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCGGATCAGTATAAGAGCCCAGGCACCAACCCGCCCCGGCCTGGAGCCTTTCCTGGAGCCAGCAGCCCCGGGCCAGTGGCTGACCTGTACGGCCCCACCAGCCAGGACTCCGGCGTGGGCAACTACATTAGCGCTGCTAGCCCCCAGCCTGGCTCCGGCTTCGGACACAGCATTGCTAGTTTATCAGGAGGCCCGGGGAAGACTGGCCGGAGTTTTTAATTGGTTCTGTGTACAGGTAAAGGCCATTAAACTTCAAGCACTACAGCGCTGAACGGGAATCTAAAGCTGAGATGGCGCCACACGAAGAACAAACCGAAATGTCAGAATCATCtcagaaagaagaagaaaaaaatacaacaactaAAGAATCTGCTGTACTATACTGAAACCCTGGCTTTTGAATATGTTATCCTAGTGTAGCCCTGACCTTAACTTaggatttgatttgatttctttgtccttttttccccttttagAAGAGTTTTATTCATCTTTTATTGTGTACACGTTGACTCAACCAACGTTTCTTTCTTTCAAAGTTTCTAGATGTTCTTCATTGTTCTTGAATGTTCTCTGACGAGAGCGACTATGTAAACATGAACTAATgtcctttttt

Function

GO:

id name namespace
GO:0021772 olfactory bulb development biological_process
GO:0005844 polysome cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1268 Predicted to enable RNA binding activity. Acts upstream of or within olfactory bulb development. Predicted to be part of polysome. Predicted to be active in cytoplasm. Is expressed in nervous system and otic vesicle. Orthologous to human MSI2 (musashi RNA binding protein 2).

Ensembl:

ensembl_id ENSDART00000156584

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018833 lncRNA downstream 64461 30359330 ~ 30361414 (-) True XLOC_009326
TCONS_00018832 lncRNA downstream 103661 30316728 ~ 30322214 (-) True XLOC_009325
TCONS_00018831 lncRNA downstream 107824 30316728 ~ 30318051 (-) False XLOC_009325
TCONS_00019202 lncRNA downstream 120075 30300780 ~ 30305800 (-) True XLOC_009324
TCONS_00019201 lncRNA downstream 267200 30156924 ~ 30158675 (-) True XLOC_009323
TCONS_00018335 lncRNA upstream 159090 30609988 ~ 30816474 (-) False XLOC_009327
TCONS_00018339 lncRNA upstream 363168 30814066 ~ 30816507 (-) False XLOC_009327
TCONS_00018343 lncRNA upstream 393210 30844108 ~ 30848582 (-) False XLOC_009328
TCONS_00019203 lncRNA upstream 460504 30911402 ~ 30915261 (-) True XLOC_009330
TCONS_00019204 lncRNA upstream 472252 30923150 ~ 30924089 (-) True XLOC_009331
TCONS_00018313 mRNA downstream 827196 29595719 ~ 29598679 (-) True XLOC_009315
TCONS_00018312 mRNA downstream 827431 29593547 ~ 29598444 (-) False XLOC_009315
TCONS_00018310 mRNA downstream 839128 29564364 ~ 29586747 (-) False XLOC_009314
TCONS_00018311 mRNA downstream 852608 29564374 ~ 29573267 (-) True XLOC_009314
TCONS_00018308 mRNA downstream 869118 29549115 ~ 29556757 (-) False XLOC_009313
TCONS_00018333 mRNA upstream 44323 30495221 ~ 30815947 (-) False XLOC_009327
TCONS_00018334 mRNA upstream 54590 30505488 ~ 30832171 (-) False XLOC_009327
TCONS_00018336 mRNA upstream 159413 30610311 ~ 30832897 (-) False XLOC_009327
TCONS_00018337 mRNA upstream 159435 30610333 ~ 30832206 (-) False XLOC_009327
TCONS_00018338 mRNA upstream 362741 30813639 ~ 30816514 (-) False XLOC_009327
TCONS_00018322 other downstream 548487 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018320 other downstream 755569 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018305 other downstream 1039436 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018276 other downstream 1690834 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018264 other downstream 2050248 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018344 other upstream 393491 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018355 other upstream 611659 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018367 other upstream 755540 31206438 ~ 31237395 (-) True XLOC_009339
TCONS_00018370 other upstream 848665 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018372 other upstream 864311 31315209 ~ 31315548 (-) True XLOC_009344

Expression Profile

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