RNA id: TCONS_00018341


Basic Information

Item Value
RNA id TCONS_00018341
length 6341
RNA type mRNA
GC content 0.45
exon number 10
gene id XLOC_009328
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 30836981 ~ 30857350 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTAGCTGCTAGGGTCCAACGGAGATGCCACTGAGGTTCCGGTCCTTTGTTCCGTATACGCTTCCCGGAGTGCTGGCGCTCATAGGCTGGTGGTGGTACATCTCCCGCAAAAAAGAGCGAATCACCAGCCACGACAGTGAGGAGGACTCACTCATGGGATTGCGGACCTCCTCTGGTGAGGGCAGCAATGGGATGGTCGACAAAAGCTGCCCTGCATCCAGCAGCACACACCGTAAAACCAGCCAAGACAGAGTCAAGGCCAAAGAGCACAGGCCTGTTGAGCAGGAAGTGGTAGCGGAGATTCACACACCAGTGCTAAAAGCCACTGCAGGAGAGGCTCTTGGCACCCCTCCAGTTGTCTTAGCAAGTGGACAACTAAGCGCTCCTCACAGCGGTACAAAATCAGTCCCCCCCAAAAGCCACCCAGAGACCACTAGCCAGACAACTCCTGTGTCATCTTCAACCCCCACAAAAACAGTTGAGGAAACCCCTCATCACAAAGGACCAGATGTCGCAACTGATGCCAGACCATCAAGCCAGTTACCGCCAGCAAGCACTGATTCAATCAAGAAGCAGGTTGAAAACCAAACACTAACTAGCCAGCGTTCTGTAGAGCTAGCCAAAGCAGAGCGACCCGAACCTGAGGGAGAGGTGGCCACTGAAAGCTTAGCAACAACTTGTGCTCAAAATCTGCAGGCTGACATTTCTAAAGATGAACTGGCCTCCACTATATCTTCAACAGAGAGTGAAGCTGTCCTGCTGGAGACCTGCAGCCCAAAAACACCCTTAAATTTGACCTCATTTCCCAACTCCACCAGCACACCCCTCTCAGAAAGCTCCACTGGGGCTCAGCATCATGAGAACGGAGACCTGGGCCTGCCGGCTGAGACTAGTCCAGACTTGCAGGAGCTTCAACGTCTCGCGGCGGGGCTGATCACTGAGGTTATCTCAGCAGCCACCCAGGAGGTCATGGCAGTCAGCAGCTGTGAGTCCCGGTACAGCAAAGGTTCAGAAGCATCCGACGACAGCACACTGGCTCTAAATGGTAAAGAGGAATCTAGTCAACTTCCAAAAAGTGCAGAGTCCCGGGCGGCACAGATAGCAGAAGAGATTGTCAATGGTTGTCTAGCACCTTCGCTCTGGAAGATGCCGGAGAATGAAAAAGATCGAGGGTTGTTGTCTGTGCCGTCTGGAGAACAGTTGGAATCCACACCAACTCTGGCCAAGTTGCAGGCGGAGGAAGCTCTAGTGGAAGACTCCGGATGTAGCACGTGCCAGTCCGAGGATGGCGTCAGCAGCGAGGACCTTCATAGCACAGGGTTGTCTTCGACAGTATCTGAGAGCAAAGAGGACCTCATTCAAATTTCAGGGACTTGTAAGGCCACAGAGGGTCAAGAAGATAGACTGCACGAAAGTCTTGCTCTGATTGCCCCTCAGGAGTCACCCCTTACTGCAGAAAATGTGGCTACGGTTTGTGAGGCAGCACGGTTAAATGGAACAGGCCTTAGGAATGGTGCCGCCAGTGAGGTAGACGCTGACCAATCTGGAGGTTCAGATGTGAATAGCATGGATTCAGTGGACAGCTGTTCTACCTTGGGGGCGGGAGATGGTCAGCTGAGTGCCAGCCAGACCTGTCAATCACAGAGCTCAGAGCTTATTGTGTGGGAGATTGAGGTGCCAAAGCATCTAGTTGGGCGGTTAATAGGCAAACAAGGGAGATACGTGAGCTTCTTGAAGCAGAGCTCTGGTGCTAAGATCTACATTTCAACCCTGCCTTACACTCAAGAGTTTCAGATCTGCCATATAGAAGggaCCCAGCAGCAGGTAGACAAGGCACTGGCTTTGATTGGGAAAAAGTTCAAAGACCTCGACCTGACCAACTTGTATGCCCCACCTCCCCCGCCGCTAACGCTGCCCTCTCTGCCCATGACTTCTTGGCTTCTGTTGCCCAGTGGTGTGACGGTAGAAGTAATTGTGGTGAACATCGTTTCTGCTGGTCACGTATTTGTCCAGCAACACACTCACCCTACGTATCATGCCCTGCGCAGTCTGGACCAGCAGATGTTCCTGTGCTATTCGCAGCCCGGCACTCCTCCATTACCATCGCCTGTTGAAGTTGGAGTGATATGTGCGGCCCCAGCTGTTGATGGAGCGTGGTGGCGAGCGCAGGTCATCTCCTTCTACAAAGATTCAACTGAAGTGGAAATCCGATATGTTGATTATGGAGGCTACGACAGAGTCAAGATTGACACCCTTCGACAGATCAGGTCAGACTTTGTGACATTACCCTTCCAAGGAACAGAAGTGCTATTGGACAACATTGCCCCACTACCAGGAGAGGATCGGTTCTCAGCAGAGGCCAATTCTGCACTGGAAGAGATGACGAGAGGGGTTCCATTGCTGGCACAAGTCACCAACTATGACAATAATACAGGACTTCCTTTAGTACACATGTGGAACATGGTGGGAGAGGAGCTGGTCCTGCTCAATCGCACTTTGGCAGAGCGAGGTTTCGGCACCTGGGTGGACAGTTTCTGATCCTCCAGAGCTCCTCGCCCTGCTCTCCTCACTCACCTCATGGCCCACCTGCCCCTTAATAATCACCACTCATGGATATCTGCAGGTTCAGTCCTGTCCTCTCCCACCGTGTCCTCCACCACCACCTCCTGAAGTGCGCATCACTGGCTCCTGgaataaatttttttcttctttccttttTGATTTGCTTTCCCCTGCATACAgcctttttctgttttcttttttcatttctatCCCCCTTGCGTAAGAAATTTACTGTACGAAAAAAGAGAAAGAGCCAATCGTCAAGTTACCGAACAACCAATAAGGACTCAAGTGTTATTGACTTTGTGCTcttgtaaatttaaaatattgtaactaaaataaaggttaatcaTGTTTTCCGTCCAATCAGACTCCTTCcagcacacacaaaaagaaaaacaactgtGGATTATCTTGCTGTGGATTTGAAGAACCTGTAGTAATAAAGTACATTGAAGAAGAAAACTGTGGTGCGGTAGAAACTGCgcgttgttgttgctgctgctgacTTGAGAAGTCATGTTTTGCGTCTATCACGGCTTCATCAAAGTGTTTCACTTTCCAGGCATGGTGGAAAGCCAGAACGTTTTGGCGAGGAATAAATGACCATAACTTCATGTCCTTCATCTCAATGTTTGTCTGTCCAACAGTGTGGCCTTAAGAGGGTGATGCGCATCCCATCTCATGACCTCCCTCTTCACCACACTCCAGATCTGTGGGACTCCAGCTGCCTTCAGCTTCGGTAGATCTTAACGGTTAATTCGCTTCACATCGGTTAATCCAGGAGACCTTTGTGCCCTCCTGAATTCTGGGCCTTTTTTAAGGAAAACTACATTGAGACCCCACACTAGAGCTCGACTGGTGCTGAAAGGCATCATGTGTGCTCAATCCTGACATGTGGAGACACTAAAAGAACGACTACATCAACCAGAACACTATCACGTGACGGCACATTTCTTTTCTGGGTGGATGAACTGTATTCAGTGggtctgtgtgtttttgtatgcatGTAATTCAGCTCCAAAGCATGTCGATTCACTTGTCACAATCATCCGTGTGACAGGCCGCTTGCTTTCGTCTCACTCTCGCAATAACATCACTTCAAGTAGACCCATTGCCATTAATGTTTCTTTGCATTATGTAAATATAATGGTACACTGCATCCAATCCCAGCAACCCACGCAATTGGCCACTAGGAGAAGCTGTCGATACACCTATCTGTCTTGGAGAGGACAAAAAAGCTTTAAGCCTTATTATCCATTGCTCTTTTTATGTTGGTTTTTACATGGGATGTAATTAAGGTCTGCTTTATTACTGTATAATTTGTCAAAGAATAATGGCACAGAGATTAATATTCCCTGTTCTTTTTCGAATCTTGTCATTAATCATGCTCCAGCAGTCATTCACAAGGCTTGTTCATTTCTTTAGCTGCTGAGTTATTGCTAATGCAATGTTGTCCAGCATGTCTAGAATGGCGTGGGACATTTCCAGGCTAGTTGGTTGTTAGCACTACAGTTGTTAGCCTCTAAATCCCTTGAGGAACTTCTCTAAAACCCCTGTTACTGTACATATTTGGCTTTACCAGAGATATTCTGgatataaacaaacagaaaatatatagTTTTGTACTTATTTTGAAACTATTATACACCCTGCCGACTTTAGCCTGTGTGTAAACTGACAGCGTTGGAAAGTAACATTGATTGAAAGCAGGTTTAGGGGATTGTCACGGTTTTCCCATGATGCTacgtggtgttttttttttttgtttcccccCACATCTTCTGTTTCCATACTGCGTTCATCTCAGGTATGAGCTTTTCATTTCATCCTTCTTGTGTTTGAGGAGAGTTATTAGTCATATTGTTTCAGGAATTGCTGTACTTGACCTGTGTGAACGTTCGCGGCCCGTTATAGGTTTGCCTGCATTACAGTAGGCGGATGAATAAGGAACCTCGCCGACCTCACAGCCGAAACGTTTCATTGTTCTGTCTTTTAGGTCTGtcttttacatttaatgtatCAATCATGTCCAATTAACCTCCGCATTTACGCTCATATCTTCACTGACACGACTTCCTACCACCAGTTCAAATGTATCGACCTGTATGTTCCAACTGTAACAAAAAGTCACGCTTCTTTAGACTTGTCcaggtgtgtgcgtgtatatatatatataagatgtcTCACTGTACTTTTGTAAAAACACTGAAAGCGAGTGTAGGAAACAAAAGggaacatgctttttttttttttttttcctcatccacatCATCCCAAATCTGCTCATTTGTTCTCTGTTGGTAGGAATGGTTTGCTATGTTTGCTTAGCTAGATAATTaatcatttgattatttaaatgagtgTAAGAAATCCTGCATAGACATGTacaggtcagttttttttttgccagactcATTACAAGGTTTGATTCTTTGGTTGTACAGATCTATTGGAAAAAAGagaataaagttattaaaaacatttatgtcaCGTTTTAGTTTGGAAATGATTTTGGTTTGTAGAAAATTTAAAGATTATGGTTAAATCTTTCATTTATAATACATAATCTTTCTTTTGGCAGCCATAGAAATGTCATAGTGTTTGAGAAAGCGTTCATCCACTAATTTTTCTTCTTAGACTTGGTCACTTAATTCATGTGTGGTCacctcagcagaatgaaccaccgacttatcctgcatatgttttacacagtggatacctttctagctgcaatccagtactgaaaacagttattcacacacatacactgaccaatttagtttcttcagcatgtctttggacgggggggaaactggagcacctggagaaacccacgcaaacatggggaggacatgcaaactccatacagaaataccaactggtccAGTCTGggcttgaactagtgaccttcttgctatgaggtgacagtgctaaccactgagccaccgtgttgccaagAAAGTGATCAAGTACcagtaaatacttttaaatagttATTACAAAATTTGTGCTGTTTTGACTGCTTATAAACTGAAAACTTTCTGTTTTTAACCAGAGATGTTTGTACTATAATTCAGTGTAATAGACTGACTAAATTATACTAAAATTGAACTGAGTGctggtttaaaaaaatgaaaccgGTTTAAactgtatttgtatgtatgtgtgtgtttatacagtgcTCATAAATGAGAAAATCCCTcacatgtattttattattttttgtaggaTAAATTTGTCATAtgatacactcaccagccactttattaggtacacctgtccaactgcttgttaacacaaatttctaatcagccaatcacatggcagcaactcaaggcatttaggcatgtagacatggtcaagattttctgaagttcaaactgagcatcagaattcgttagaaaggtgatttaagtgactgaacgtggcatggttgttggtgccagacgggctggtctgagtattttaaaaactgctgctctgttgggattttcacacatacaaccatctgtaggggtttacagagaatggtctgataaaGTAAAAATTTCCAGGGAGTGGCAGTTctatgagcgcaaatgccttgttgatgtcagagaatGGCAAGAGTGATTTGAGCTGAAagaaaggcagcagtaactcaaataaccactggtTACAACTGAGGtgtacagaagagcatctctgaacgcacaacacatcaaaccttgaggcggatgggctacagcagcagaagaccattgTCTTCACaatgaggctacaattcatacaggct

Function

GO:

id name namespace
GO:0010738 regulation of protein kinase A signaling biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0034237 protein kinase A regulatory subunit binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6844 Predicted to enable RNA binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; musculature system; and segmental plate. Orthologous to human AKAP1 (A-kinase anchoring protein 1).

Ensembl:

ensembl_id ENSDART00000112511

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018339 lncRNA downstream 20474 30814066 ~ 30816507 (-) False XLOC_009327
TCONS_00018335 lncRNA downstream 20507 30609988 ~ 30816474 (-) False XLOC_009327
TCONS_00018833 lncRNA downstream 475567 30359330 ~ 30361414 (-) True XLOC_009326
TCONS_00018832 lncRNA downstream 514767 30316728 ~ 30322214 (-) True XLOC_009325
TCONS_00018831 lncRNA downstream 518930 30316728 ~ 30318051 (-) False XLOC_009325
TCONS_00019203 lncRNA upstream 58156 30911402 ~ 30915261 (-) True XLOC_009330
TCONS_00019204 lncRNA upstream 69904 30923150 ~ 30924089 (-) True XLOC_009331
TCONS_00018351 lncRNA upstream 152735 31005981 ~ 31012712 (-) True XLOC_009333
TCONS_00018361 lncRNA upstream 313449 31166695 ~ 31167511 (-) True XLOC_009338
TCONS_00018395 lncRNA upstream 660960 31514206 ~ 31516514 (-) True XLOC_009359
TCONS_00018336 mRNA downstream 4084 30610311 ~ 30832897 (-) False XLOC_009327
TCONS_00018337 mRNA downstream 4775 30610333 ~ 30832206 (-) False XLOC_009327
TCONS_00018334 mRNA downstream 4810 30505488 ~ 30832171 (-) False XLOC_009327
TCONS_00018326 mRNA downstream 20425 30424645 ~ 30816556 (-) False XLOC_009327
TCONS_00018338 mRNA downstream 20467 30813639 ~ 30816514 (-) False XLOC_009327
TCONS_00018345 mRNA upstream 8401 30861647 ~ 30984804 (-) False XLOC_009329
TCONS_00018346 mRNA upstream 10749 30863995 ~ 30867594 (-) False XLOC_009329
TCONS_00018347 mRNA upstream 11260 30864506 ~ 30984557 (-) True XLOC_009329
TCONS_00018348 mRNA upstream 134168 30987414 ~ 30989360 (-) False XLOC_009332
TCONS_00018349 mRNA upstream 134169 30987415 ~ 31000275 (-) False XLOC_009332
TCONS_00018322 other downstream 959593 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018320 other downstream 1166675 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018305 other downstream 1450542 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018276 other downstream 2101940 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018264 other downstream 2461354 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018355 other upstream 209311 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018367 other upstream 353192 31206438 ~ 31237395 (-) True XLOC_009339
TCONS_00018370 other upstream 446317 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018372 other upstream 461963 31315209 ~ 31315548 (-) True XLOC_009344
TCONS_00018378 other upstream 508541 31361787 ~ 31362141 (-) True XLOC_009348

Expression Profile

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