RNA id: TCONS_00018347


Basic Information

Item Value
RNA id TCONS_00018347
length 8334
RNA type mRNA
GC content 0.50
exon number 58
gene id XLOC_009329
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 30861647 ~ 30984804 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGGCGCACAAGCCCGTGGAATGGGTCCAGGCCATCATTAACAGATTCGACGAACAGCTCCCAATCAAAACAGGACAGCAGAGCACCCACACCAAAGTGAGTACAGAGCACAACAAAGAATGTTTGATCAACATCTCCAAGTACAAATTTGCCCTCGTCATCAATGGCCTGACCAACATACTCAAAAATGTGAACAACATGCGGATATTTGGCGAAGCTGCTGAGAAGAACCTCTACTTCTCCCAGCTGATCATACTGGACACACTGGAGAAGTGTCTAGCAGGGCAACCTAAGGATTGCCTGAGGCTGGATGAGGCTATGTTGGTAAAACAGTTGCTGCCTGAAATCTGTCACTTCCTGCACTCGTACCGTGAGGGCCAGCAACACGCCACTCAGCTGCGCAGCTCCGCCTCTGCTGTGCTTTTCTCTCTCAGCTGCAACAACTTTAATGCCGTCTTCAGTCGTATCTCCACCAGGTTGCAAGAGCTCACAGTTTGTACAGAGGACACAGTGGATGTCCATGACATTGAGCTCATTCAGTATATCAATGTAGATTGCTCCAAGTTAAAGAGACTCCTACAAGAAGCAGTACTTAAGTTCAAGTCTTTGAAAAAGCCGGCTCAGCTTGCAGTAATCAGCAGTTTGGAAAAGGCTTTCTGGAACTGGGTTGAACACTACCCTGATGATTTCACTATGCTCTATCAGAGACCCCAGGCCGACATGGCCGACTGTGCAGAGAGACTGTTCGACCTAGTGGACAGTTTTGCGGAAAGCGCAAAGAGAAAAGCTGCTGTGTGGCCACTGCAGATCATCCTCCTCATCCTCTGTCCAGAGATCACGCAGAGCATCACCAAAGAAGTAGGGGGAGAGGAGAAAGCTAACAAGAAGTCATTTGTAGACAGTTTACGAAAGGCTCTTGGCCAACACAGCGGCAGCAAACAATTGACGGAAAGTGCAGCTGTTGCATGCGTCAAACTCTGCAAAGCCTGCACATATATCAACTGGGAGGATAATTCTGTCATCTTTCTCCTGGTTCAGTCCATCGTCATGGACCTTAAGGGTCTCCTGTTTAACCCCACCAAACCTTTCTCAAGAGGTACGGGCTGCCAGAGCGCCGATGTAGATTTGATGATCGACTGCTTTGTGTCATGTTATCGCATCAATCCTCGCAACAACCAGCATTTTAAGGTGTGTCTGGCCTCGACTTCTCCTCCTACCTTCCATTTCGTCCTTGTCAACTCCCTGCACAAAATTATCACAAATTCTCACCTGGACTGGTGGCCGAAGATTGACGCCATCTACTGCTACTCAGGAGAACTACGCACCATGTTTGCAGACACACTGGGTCGAGTGATTCAGAGTCTCAGTGCACATCCGCCTCTGAGGATGACATCAAGTTTGACATTCAAAGAGAAAATGACAACAAGTTTGAAGTTCAAGGAAAAGTCCACAGATCTTGATTCGCGTTCTTTGCTGCTGGCACTGGTCAAACTTATCCACGCTGACCCCAAACTAATGCTGCACAATCCGGGAAAACCTGGTCAGGAGATTCAGAACAGCACAGCTGAGATCATCAAAGGTCTGGTTCAGCTGGTTCCTCTTACCCACAGTGCTGAGCTTTCCCAAGAGGCCATGGAGGCATTGCTTGTTTTACATCAGCCAGAAACCATTGAGCTATGGAACCCGGACGCTCCCATTGAGACCTTCTGGGACATCAGCTCTCAGGTGTTATTTCTAATTTGTAAGAAGCTGATTGGACACCAGATGATCAACAGTACAGAGATACTCAAGTGGCTCAGGGAGATTCTCATATGCAGGAACAAGTTTCTATTAAAGAACAAGGAGTGTGCTACACAGGGCAGTCTGATCCCCATCAGCAGACAGGCTCAGACCAAGCTGGAGGTGTGTCTGTACACGTTCCTGTGGAGTCCTGATGCAGAGGCTGTTTTGGTGGCCATGTCCTGTTTCAGGCATCTCTGTGAGGAGGCCGATATTCGCTGCAGTGTCGATGAGCTGCCTGTTCACACAGTCCTACCCAATTACAACACCTTCATTGAGCTTGCATCCGTCAGCAATATGATGGCCACAGGTCGCAACACACTACAAAAAAGAGTGATGGCACTTTTAAGAAGAATAAAGCACCCTACAGCTGGAAATGTAGAGgcaTGGGAAGACACATATGCAAAGTGGGAGCAAGCTACAAAACAGATACTCAACCACCCAAAAAACAAAGTGGAAGATGGACAGGAGTGGATCAACATGACTGGTTTCTTGTGCGCTCTGGGAGGTGTTTGTCTCCAACAGCGCAGCACGCCGAGTCTGGGCACCTACAGTCCTCCAATGGGCCCCCTGACCGAACGCAAGGGGTCCATGATTTCCATGAGCTCCTGCGAGGTAAACAGCGAAACATCCCTGAATCGCTTTCTGGAGCGTCTGCTGGCTCTGATGGTCTGCACACATGAGAAAGTGGGAGTGCAAATTCGCACCAACGTCAAAGACCTGGTGGGACTGGAGCTCAGTCCGGCTCTCTATTCAATGCTCTTCACTAAGCTGCGCAACAGCATCGGACGCTTCTTTGACACCCAGGGGCCGGTTCCTATTACAGATGCAAACACTCTGTTTGTAGAGCAGACCATTGCTATCATGAAGAACTTGCTGGACAGTCACACTGAAGGAAGCTCAGAGCACCTTGGTCAAGCCAGCATTGAGACCATGATGCTCAATCTAGTTAGGTATGTGCGTATTTTAGGGAACATTGTTCATGCCATTCAGATCAAAACCAAGTTGTGTCAGTTAGTGGAGGTGATGATGGAGCGCAGGGATGACCTCTCCTTCTGCCAGGAGATGAAATTCAGGAATAAAATGGTGGAGTACCTCACAGACTGGGTGATGGGAACCTCCAATCAAGCTGCGGACGATGATGTCAAATGCCTGACCCGCGATCTGGACCAGGCCAGTATGGAGGCTGTCGTGTCTCTGTTGGCTGGTCTTCCTCTACAGCCTGAGGAGGGTGACGGTGTTGAGCTCATGGAGGCCAAATCACAGCTCTTCCTGAAGTACTTCACACTGTTCATGAACCTGTTGAATGACTGCAGCGAGGTTGAGGAAGATGGCCAGCAGGTCGCAGGGAGGAAACGTGGCATGTCTAGACGACTGGCATCTCTGCGGCACTGCACAGTATTGGCTATGTCTAACTTGCTCAATGCTAATGTGGATAGCGGCCTCATGCACTCAATCGGTCTGGGATACCATAAGGACCTGCAGACACGGGCTACATTTATGGAAGTGCTCACTAAGATCCTTCAGCAAGGGACGGAGTTCGACACGCTTGCAGAGACTGTGCTTGCAGATCGCTTTGAGAGACTGGTCGAGCTGGTCACCATGATGGGAGATCAGGGAGAGCTGCCCATAGCCATGGCTCTGGCCAATGTGGTCCCATGCTCTCAATGGGATGAGCTGGCCAGAGTGTTAGTGACTCTCTTCGACTCTCGCCATCTGCTGTATCAGCTGTTGTGGAATATGTTCTCCAAAGAGGTGGAGCTGGCAGACTCAATGCAGACGCTCTTTAGAGGAAATAGCCTAGCCAGCAAGATTATGACCTTCTGCTTCAAGGTGTACGGAGCTGCGTATCTACAGAAGCTTCTGGAGCCGCTGTTGAGAGGAATCATCACTACACCAGAGTGGCAGCAGATCAGTTTTGAAGTGGACCCTACTAGACTTGAACAGGCAGAGAACCTGGAGGAGAACCAGAAGAACCTGCTTCAGATCACTGACCGCTTCTTCCTGGCCATCATCAACTCCTCGAGCGAGTTTCCTCCACAGCTGCGCAGTGTGTGCCACTGTCTGTATCAGGCTACTTGCCACTCCCTTCTGAATAAAGCCACtgttaaagaaaaaaaggaaaacaaaaaatcCGTGGTCAGTCAGCGGTTTCCTCAGAACAGCATTGGTGCTGTAGGAAGTGCCATGTTCCTGCGCTTTATTAACCCAGCTATCGTGTCCCCATATGAGGCTGGAATCCTAGACAAGAAACCCCCACCTCGCATCGAGCGTGGCCTTAAACTCATGTCTAAGATTCTGCAGAGCATTGCTAATCATGTTCTCTTCACAAAAGAGGAGCATATGAGGCCCTTTAATGATTTTGTCAAAAGCAACTTCGATGCAGCCAGAAgGTTCTTCTTGGATATCGCATCTGATTCTCCACCAAGTGATTCTGTGAACCATAGTCTGTCTTTCATCAGTGACGGTAATGTGCTCGCTCTGCACCGGCTATTATGGAACAACCAGGAAAGAATTGGCCAATACCTGTCCAGCAACAGGGACCACAAGGCAGTGGGCCGTAGACCATTTGACAAGATGGCCACTCTTCTGGCGTACCTGGGTCCTCCTGAACATAAGCCAGTAGCAGACACACACTGGTCCAGCCTCAACCTCACCAGCTCAAAGTTTGAGGAGTTCATGACAAGGCATCAAGTCCATGAGAAGGAGGaatttaaagcattaaaaacCCTCAACATATTTTACCAAGCTGGCACATCTAAGAACGGCAACCCTGTGTTTTATTACATCGCACGCAGGTTCAAAACTGGACAAATCAATGGTGATCTTCTGATCTACCACGTCCTGCTGACGCTCAAGCCCTACTATGCCAAGCATTATGAGATCGTAGTTGACCTTACTCATGTGGGCCCCAGTAACCGTTTCAAGACGGACTTCTTATCCAAATGGTTTGTGGTCTTTCCAAACTTCGCCTATGAGAACGTGGCTGCTGTGTACATCTACAACTGCAACACCTGGGTACGCGAGTACACCAAATACCACGAGCGACTGCTGACTGGCCTCAAGGGGAGCAAGAAGCTGGTGTTTATCGATTCGCCTGCACGTCTAGCTGAACACATCGAACCCGAACAGCAGAAGCTGCCCGCAGCTACTTTAGCACTGGAAGAAGACCTCAAAGTGTTCCACAACGCCCTAAAGCTtgcacacagagacacaaaagTGTCAATTAAGGTGGGATCCACAGCTGTACAGGTGACCTCGGCCGAAAGAACGCGTGTCCTAGGACAGCCTGTGTTCCTAAATGACATCTACTACGCTTCAGAGATCGAGGAGATATGCCTGGTGGACGAGAACCAGTTCACGCTAACCATCGCTAACCAGGGCACCCCACTCACTTTCATGCACCAGGAGTGTGAAGCCATCGTTCAGTCCATCATCCACATCCGCACGCGCTGGGAACTTTCCCAACCAGACTCCATTCCCCAACACACCAAAATCAGGCCTAAGGATGTTCCTGGCACCCTGCTCAACATCGCTCTTCTCAACCTGGGAAGCTCCGACCCCAGTCTGAGGTCTGCGGCCTACAATCTCCTTTGTGCCTTAACCTGCACCTTCAACCTGAAGATTGAAGGCCAGCTTCTGGAAACGTCTggcttgtgcatcccagccaacAACACGCTTTTTATTGTGTCCATTAGCAAAACGCTAGCAGCTAATGAACCCCACCTCACTCTGGAGTTCCTGGAAGAGTGCATCTCAGGATTCAGTAAATCAAGTATAGAGCTGAAGCATCTGTGTCTAGAATATATGACTCCTTGGCTCCGTAATTTGGTGCGCTTTTGCAAACACAATGATGACGCCAAACGGCAGCGTGTCACGGCCATCCTGGACAAGCTTATTACTATGACCATCAACGAGAAGCAGATGTACCCCTCCATACAGGCCAAGATATGGGGCAGCTTGGGTCAGATCACAGACCTGCTTGATGTGGTGTTGGACAGCTTTATAAAGACCAGCGCTACTGGCGGTTTAGGATCCATCAAAGCTGAAGTGATGGCTGACACTGCTGTAGCTTTGGCGTCAGGAAATGTCAAACTGGTCTCCAGCAAGGTGATTGGCCGAATGTGTAAGATCATCGACAAGACGTGTCTGTCTCCCACTCCGACCCTTGAGCAGCACCTCATGTGGGACGACATCGCCATCCTGGCCCGGTACATGCTCATGCTGTCCTTCAACAACTCTCTGGACGTGGCCGCTCATCTGCCATACCTGTTCCACGTCGTCACCCTGCTGGTGGCCACGGGCCCTCTCTCGCTGCGTGCATCAACACACGGCCTGGTCATCAACATCATTCACTCGCTCTGCACATGCTCACAACTCAACTTCAGTGAGGAGACTAAACAGGTGCTGCGCCTGAGTCTGACTGAGTTCTCCCTGCCCAAGTTCTACCTGCTGTTCGGCATCAGTAAGGTCAAATCTGCGGCGGTCATCGCTTTCCGTTCCAGCTACAGAGACCGCTCATTCTCTCCAGGCTCTTATGAGAGAGAGACATTTGCTCTGTCTTCCCTGGAAACAGTCACGGAGGCTCTTTTGGAGATCATGGAGGCCTGCATGAGGGACATTCCTGGATGCAAATGGCTAGATCAGTGGACTGAATTGGCGCAAAAGTTTGCGTTCCAGTATAACCCCTCTCTTCAGCCTCGGGCGCTGGTGGTGTTCGGCTGCATCAGTAAACGAGTGACTCACGGACAGCTAAAGCAGATCATTCGTATTCTCAGTAAAGCCAGTCCTCTACTCAGCATTGATCGGGGGCTGGAGAGCTGCTTAAAGGGCCCAGATAATTACAACAGCCAGGTTCTCATCGAAGCCACAGTCATCGCTCTCACCAAACTACAGCCTCTCCTCGATCAGGATTCTCCTATGCATAAAGCTCTGTTCTGGGTGGCCGTGGCCGTGCTTCAGTTGGATGAAGTGAATCTGTACTCCGCCGGCACTGCCTTACTGGAGCAGAACCTGCACACACTGGACAGCCTCCGAGTGTTTAATGATAAGAGTCCTGAAGAGGTTTTTATGGAGATCCGGAAACCTCTAGAGTGGCACTGTAAACAAATGGACCATTTTGTGGGACTCAACTTTGCCTCCAACTTCAATTTTGCATTAGTGGGCCATTTACTTAAAgGATACAGACATCCCTCTTCAACAACAGTTGCCAGGACAGTTCGTATCCTGCATACACTCCTGGGCCTGGTGGGAAAACACCGCAGCTGTGACAAGTTTGAGGTGAACACGCAGAGTGTGGCCTATCTGGCAGCTTTGCTCACAGTGTCAGAGGAAGTTAGGAGCCGCTGCAGTTTAAAGCACAGGAAATCATTGCTGCTTTCAGAAGTTACAATGGAGAACTTCCCCATGGACACATACACCGTTTACGACACTGAACCCGGGTGCAGGCTACTGCGTGAAAACCAGCCTTGGGCTTCTCCGAAAGTGTCAGAGCGCAGTCTTGCACCTCCGTACTCCACAATAGGGCAGACCAGCCTTCGTCCACGCAAATCCATGAGTGTAGACATGGGCCAGCCGTCTCAGGCCAATGCGAAGAAACTACTGGGCACTAGAAAGAGTTTCGATCACTTAATATCAGAATCCAAAGCCCCAAAAAGACCAGACATGGAGTCGGGCATCACCACACCTCCAAAGATGAGGCGGGTTTCTGAAAATGACTATGAGATCGAAACTCAGCGAATAGCCAACTCTCATTTACGCAAAGTGTCTGTGTCTGAATCCAATGTCCTCCTGGACGAGAACGTACTTACGGACCCCAAGATCCAGACGTTGCTCCTCACTGTACTGGCAACACTGGTGAAGTACACTACAGACGAGTTTCATCAGCGGATCTTGTATGAGTATTTGGCTGAGGCCAGTGTGGTCTTCCCCAAGGTCTTTCCAGTTGTGCACAACCTGCTGGACTCCAAGTTAAGCACCGTCCTTTCCATGTGCCAGGACCCGAACCTTCTGAACCCCGTCCATGGCATCATTCAGAACGTGGTCTATCATGAGGAGTCTCCCCCTCAGTACCAGCCGTCCTGCTTGCAGAgctTTGGTTTCAATGGTCTTTGGAGGTTTGCCGGGCCGTTCTCTAAGCAAACCCAAATTCCAGACTACGCCGAGCTGGTGGTTAAATTTTTGGATGCTTTGATTGACACGTATCTCCCGGGCATTGAGGAGGAAGGAGGAGAAGAGTCACTGCGGACCCCGACCTCGCCATATCCACCAACCGTCCAGAGCCAGCTGAGCATCACAGCCAATCTCAACCTGTCCAACTCCATGACATCACTTGCCACATCACAGCACTCCCCAGCCTGTCTGCCTTGCTCTAAGTCGGCTGTATTCCCACCTCACCTCGTCCTGCCAGGCATCGACAAGGAGAACGTTGAGATTTCTCCCACCTCGAGTCTGTCCACCAGTGGGCGAATGCGGCACGGCTCAGCAAGCCAGGTGCAGAAGCAGCGCAGCGCAGGCAGCTTCAAACGGCCAAGCATCAAAAAGATCGTCTGA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0007613 memory biological_process
GO:0001568 blood vessel development biological_process
GO:0046959 habituation biological_process
GO:0070373 negative regulation of ERK1 and ERK2 cascade biological_process
GO:0060251 regulation of glial cell proliferation biological_process
GO:0070444 oligodendrocyte progenitor proliferation biological_process
GO:0045685 regulation of glial cell differentiation biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4907 Acts upstream of or within several processes, including circulatory system development; learning or memory; and negative regulation of ERK1 and ERK2 cascade. Is expressed in blood vasculature; dorsal aorta; head; heart; and spinal cord. Human ortholog(s) of this gene implicated in autistic disorder; hematologic cancer (multiple); nervous system cancer (multiple); neurofibromatosis 1; and neurofibromatosis-Noonan syndrome. Orthologous to human NF1 (neurofibromin 1).

Ensembl:

ensembl_id ENSDART00000080328

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018343 lncRNA downstream 15924 30844108 ~ 30848582 (-) False XLOC_009328
TCONS_00018339 lncRNA downstream 47999 30814066 ~ 30816507 (-) False XLOC_009327
TCONS_00018335 lncRNA downstream 48032 30609988 ~ 30816474 (-) False XLOC_009327
TCONS_00018833 lncRNA downstream 503092 30359330 ~ 30361414 (-) True XLOC_009326
TCONS_00018832 lncRNA downstream 542292 30316728 ~ 30322214 (-) True XLOC_009325
TCONS_00018351 lncRNA upstream 21424 31005981 ~ 31012712 (-) True XLOC_009333
TCONS_00018361 lncRNA upstream 182138 31166695 ~ 31167511 (-) True XLOC_009338
TCONS_00018395 lncRNA upstream 529649 31514206 ~ 31516514 (-) True XLOC_009359
TCONS_00018398 lncRNA upstream 600841 31585398 ~ 31587989 (-) True XLOC_009361
TCONS_00019205 lncRNA upstream 1428757 32413314 ~ 32433673 (-) True XLOC_009364
TCONS_00018342 mRNA downstream 7156 30840393 ~ 30857350 (-) False XLOC_009328
TCONS_00018341 mRNA downstream 11260 30836981 ~ 30853246 (-) False XLOC_009328
TCONS_00018337 mRNA downstream 32300 30610333 ~ 30832206 (-) False XLOC_009327
TCONS_00018348 mRNA upstream 2857 30987414 ~ 30989360 (-) False XLOC_009332
TCONS_00018349 mRNA upstream 2858 30987415 ~ 31000275 (-) False XLOC_009332
TCONS_00018350 mRNA upstream 9981 30994538 ~ 31000306 (-) True XLOC_009332
TCONS_00018352 mRNA upstream 37457 31022014 ~ 31027112 (-) True XLOC_009334
TCONS_00018353 mRNA upstream 47698 31032255 ~ 31043183 (-) True XLOC_009335
TCONS_00018344 other downstream 15343 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018322 other downstream 987118 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018320 other downstream 1194200 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018305 other downstream 1478067 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018276 other downstream 2129465 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018355 other upstream 78000 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018367 other upstream 221881 31206438 ~ 31237395 (-) True XLOC_009339
TCONS_00018370 other upstream 315006 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018372 other upstream 330652 31315209 ~ 31315548 (-) True XLOC_009344
TCONS_00018378 other upstream 377230 31361787 ~ 31362141 (-) True XLOC_009348

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00005525 False 3633 mRNA 0.58 22 CM030142.1 3612852 ~ 3632712 (-)