RNA id: TCONS_00019203


Basic Information

Item Value
RNA id TCONS_00019203
length 3710
lncRNA type intronic
GC content 0.38
exon number 2
gene id XLOC_009330
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 30911402 ~ 30915261 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gatttatttacaatactgttTGTAAAGTAGGATTTTctatattttagtagatatatcaTATAAGAGAATTGTTTTATTTACCAgttaagtgaatctaattggatttgctttgtaaagattaaataagttaaaaaggtttttttttcttttactttttatttatgacACTCCCAAAATtgttccacataaatctgcagatttttaaaaaaattctgtccagaaatagcaaaaaatgtctgcagtttCTGTCTGGCTCTGCATATAACCCAGGACTAGTACAGTCTTAAAGCAGTTTAACGTATAACTAACTCTTGTTTTTCTATAAATGAAGCCTTATTAACATTCTAAGcagaaaataatactaataataataatgtatttatagtGCATTTTTCTCAGACCCTAAGCGCAAAATGTAATGACAAGCTGGTTTATGATTATGATATGCTAGCTAATGAGACCCGGTTAAAATATGGATGCTTTTAAggtattaaaatgataaaaacattgacattttaaaaacttcatgAAATCCAAGCGAGAGATTTTGGTTACACTTTAGTTTAATGTCCAATTCTCTCTATTGATTAATGGTACCTGtttattacctgtctattataaagatattgtctgtttatttgtacatgtaaaatacattttctgcTTGATCTTATTGTATCCCCTAAatctacccaatacctaaacctaactactaccttaataactaataataagcaCCAATTTAGGAGTTTGCTGAGGCAAATGTGGTAGTCAATGGCTTATTAATATCGAGAAATGtacctttaaataaagtgtgaccgagatGATTTCTGACATTTTACTTATTAGCGTTGTTGGAGTGGCTATATTGTGGTGTACTTAGACTAAACTTtaacaaatacacacatttaaaatatacaatttttgtCTTCTGGACAAAAAGGACAAAGCACATTGATGATTCATCATGTACTAAATCATATTCTTCTCAGATTGAGTCCCCATTGACTATCAAGTACAAAAATCATAGTAAATGATcatattataactaaaacctaaTGATTAGTCAAGACATAGACtcttaaatgtgttgaaaacaccAGTGCTGGGAAGAAAACAACACCTATTATTTAGATACTATTATAGCAATTTCATAAAGTCTTCAAAGGTCTTTAACCATTACAGTACATTTTAAGTCCTCTGCCAGAAATCATCTTGGTGTAATTGGTTCTGGAAGAGAGAATTGATATTCACACAATACTAGGGCTGTGGTGGTGCAGGTGCATCAACACTATCTGATGTTTGAAAAGGAGCTGCTTCTTCTGAAAGGGAGTCCAGGGGAGCTTGACCATCCTGGATTTTGTTTTCCTCTGCCTGAATTGGATCTTGAACAGCTGTTGAGTTCCCATTGGTGGCGTTGGTCTCATCTGGATTCTGTACTCCAAATGTGCTGCCTTGCGGGATATCTTCCATAAAAACGTCCTCACTTGTGTTCCTACCAAACGCCAAGTGGTTGGAAATGGACATTTGGTTGAAGCTATGTCTGTTGATGGCTTCGGACTCATCCATAGTTGGCAAGTTTGGATGAACGTCACCATCTAAAAATGGAGAGGGTCCTGCCCACACAGGATTTTCTAGCTGTCTTTTCTGCATTTTGCGTTTTCTCACCAAAATAATGATGATTGCTATGAACATCAGCAAAAATGTGGTGACAATCACTCCTGCCACAGCAGGACCTGGGTTCGCTTTTTGGCTGTCTTTTTTGATTGATAGAGTGGTACTTTGTTTAGGAGTGGTCTTTTTAGTGGTTGATGATTTCTTTGTTTTAGTCACAGGTTGAGTCTTAACCTCTGGTCCTTGAGTCCATTTGATTGTAACTTTTCCCTCTGTGGTTTTCAAACCAACGGTTGCAGCCCCACTGACATTTGTTTCAGCTATTATTGCGGAAGTGTGGGCGTGAGTCATTGGGCTTGGTTCTTTTGAAGTCCCCATTGTAGTATGGCTTGTatgaacatctttatatgtattgtttttgttgGCGTCTGTTTCATTTTTTTCCACTCCGTAGAGTCCAGAGAAATCAGTAGTAGAAAGTGTTTCCAGAGTGGTTTCTTGTGTCTCTGAATGATCCCTCTTAGTTGTTCCTATCTGTGAAAAATTTGTCGTTGTGGCAATGGGTGGTTGGGTTGAGATGTTAAATTCTGTAGCATTCTCAATCTGCAAAGATGAGTTATGTAGCCTGTGGTGGATTTCTGTTGGTTTTCGTTTTTTATTTGGAGTGGTTGTGACCTCTTGTGTTATTAGCTTAATAGGCTGCGTGAGTGTAGGAGTCAAGTTTTGCTGGCTATCATCTGCATTCCTCTTCGTCCTCCAATTTGATGTTTCATCTTCATTTCTGAACGTCTGCAACAAGTCGGGCTGCTTTGAATGGCTTGTGAAGTCCTGCGTCTGCACACTTCTTGACTGTGAAACCTGAATGACTTCTCGTGTCTCTGAAGGTCCCATGCTTGTTCTTAAAGTATCCACCTTTGTAATGTAGGGGATTTTAATCGATTCTGCAGCATTTTCAGTCCTTGTTAAAAATGTTGAATCTGGTATGTTGGATGTTTCAGACATATTTGCTTGTTCTTTTTGTGCAGTTGTTGCTGCTCTTTGCGTTAAATGGTTTTCAGTTGGTCCGAATGTGTACTCACCATCACCTTCATTCCTCTTTGTTCTCCGATTAGGTGTCTCACCGTTCAGTGTCCTAGGATGGACAATTCGCTGGCCTGAGTGACTTGTGAGCTTTTGCATCTGTTTGCTTCTTGAAACTAAAACATACTTGGCTTTCTCTGGCAAAACATCTGTCCTTGTGGTATTGGGTGTTTTAGTGGATGCAAACAATTCTGTAGTATTTTCTATCTGCAAAGGAAATGTAGTATGTGGTCTGTGGGAGCTGTTGGTTTGTTTATCTTCCTTTTGTACAGTTGTTTTaacattttgcagtattttgttATTTGGTTGTGCCAGCATAGTAGTCAAGCCTTGATCATCATGCGTTTTCCTGCTACGATATGATGTCTCTTCTTCACCTTTTAACGTAAACCGTGAGTGGACTCCTTGCTGGTCTGAGTGACTTGTGAAGTCTTTCGTCTGCACGCTTCTTGAAACTGAAATCTGAGTGGCTTCCAGTGTGTCTAAAGGTCCCATGCTTCTTGGTTCCTTTGGCGAAACATTGGCATTTGTGGTATTGGGCCTTTTAGTTAAGGCATGGTGTGTAAGCACTTTCTGCAAAGGAGATGTAGATTTCTCTCTGTACCAGCTTTCTGTCATCTTTCGTTGTTCCTTTTGTGGTGTGCTTGCTACTTCCTGTGATAATTTGGTTTTAGGTTGTGCCAGCAAAGTAGTCAAGTTGTATTGGTCATTCTCTGCATTTTTACTCGTCCTCTGGTTTGATAGCTTATCATCAGCGTAGGGTGTCTTCGAGCGGATGCCTTGCTGTTCTGAGTGGCTTCTGAGGTGAAGCATCTGAATGCTTTTTGAAACTGAAACCACGTTGTCTATTCCAGAATCAATAGTGTACTCCCTTTGCCCTGATGCTTTATCTGCTGTGTTTGGTACCACGGTGTTCTTATGGCTGGTAGTTAAATGGCCATTTAGACTCCATGGAAGAAAGTAGAGGAAAGCGATTGTGCAAAGAGTAGCCCTCATGGTGTCCTTAGAGAACCTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018343 lncRNA downstream 62820 30844108 ~ 30848582 (-) False XLOC_009328
TCONS_00018339 lncRNA downstream 94895 30814066 ~ 30816507 (-) False XLOC_009327
TCONS_00018335 lncRNA downstream 94928 30609988 ~ 30816474 (-) False XLOC_009327
TCONS_00018833 lncRNA downstream 549988 30359330 ~ 30361414 (-) True XLOC_009326
TCONS_00018832 lncRNA downstream 589188 30316728 ~ 30322214 (-) True XLOC_009325
TCONS_00019204 lncRNA upstream 7889 30923150 ~ 30924089 (-) True XLOC_009331
TCONS_00018351 lncRNA upstream 90720 31005981 ~ 31012712 (-) True XLOC_009333
TCONS_00018361 lncRNA upstream 251434 31166695 ~ 31167511 (-) True XLOC_009338
TCONS_00018395 lncRNA upstream 598945 31514206 ~ 31516514 (-) True XLOC_009359
TCONS_00018398 lncRNA upstream 670137 31585398 ~ 31587989 (-) True XLOC_009361
TCONS_00018346 mRNA downstream 43808 30863995 ~ 30867594 (-) False XLOC_009329
TCONS_00018342 mRNA downstream 54052 30840393 ~ 30857350 (-) False XLOC_009328
TCONS_00018341 mRNA downstream 58156 30836981 ~ 30853246 (-) False XLOC_009328
TCONS_00018336 mRNA downstream 78505 30610311 ~ 30832897 (-) False XLOC_009327
TCONS_00018337 mRNA downstream 79196 30610333 ~ 30832206 (-) False XLOC_009327
TCONS_00018348 mRNA upstream 72153 30987414 ~ 30989360 (-) False XLOC_009332
TCONS_00018349 mRNA upstream 72154 30987415 ~ 31000275 (-) False XLOC_009332
TCONS_00018350 mRNA upstream 79277 30994538 ~ 31000306 (-) True XLOC_009332
TCONS_00018352 mRNA upstream 106753 31022014 ~ 31027112 (-) True XLOC_009334
TCONS_00018353 mRNA upstream 116994 31032255 ~ 31043183 (-) True XLOC_009335
TCONS_00018344 other downstream 62239 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018322 other downstream 1034014 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018320 other downstream 1241096 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018305 other downstream 1524963 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018276 other downstream 2176361 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018355 other upstream 147296 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018367 other upstream 291177 31206438 ~ 31237395 (-) True XLOC_009339
TCONS_00018370 other upstream 384302 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018372 other upstream 399948 31315209 ~ 31315548 (-) True XLOC_009344
TCONS_00018378 other upstream 446526 31361787 ~ 31362141 (-) True XLOC_009348

Expression Profile

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