RNA id: TCONS_00018352


Basic Information

Item Value
RNA id TCONS_00018352
length 1065
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_009334
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31022014 ~ 31027112 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCAACTGAAGATTTGCTAAAGACTCTGAAAAGCAAGAGTTGTCAGAATGGCAGACTGTCAGCAACATCCTTTTCTCAGCCCAAGCATCCCATTCATTGGTCCACTACTAGGAGGCCTGCAGGAAGGGAAGACTCTTATCATAATTGGACGGGTTTTGCCTAATGCTGACATATTTGGTGTGAATCTCCAGCATGCAGCTAAGTGCGGGACTGATATCGCTCTGCACTTTAAACCATGTTTTGATGTTGGACCTGCACATATTGTGTTCAACACCTTTGAGAAAGGTAACTGGGGGCCAGAAGAAAAGTCTACCTGTCCTTTTGTGAAAGGCCAACCGTTCACCCTTGAGATCCATGTTACCAAGGAGGCATACAAGGTAAGTGTGAATGGGCAACACTTAGCGGACTATAAACACCGTATTCCATTCACTCTGGTGGACACCATCTTAGTGCCCCTAATGGTGGAGCTGGATTTCATTGCCTACCAGAAGCCTGTGACCGTCCCATATAAAACCCTGATCAGTGATGGACTGCAGTCTGGCAAAGACATTGTTATTCATGGAGTTCCTAAAGCTGACTCAGACAGGATGACGTTTAATCTGCGCCACAGATATGGGATTGCATTTCACTACCAATGCCGTTTTGATCAGAATGCTGTTGTCCGCAACACCTGGGAGAATGGGAAATGGGGGGCAGAAGAAAAACATGGACCTGTGCCTTTTATCCGAGGCCAGTTTTTTCAGGTCAAAATCTCCTGTCACAGTGATCATTATGATGTGTTTGTGAATGGCAagcaaacacacatttacaagCACCGCTTCACTGAACTGGAGGACATCGACGTCTTTGAAATCCGTGGAAATGTGGAGGTGatttttgtgcatgtgaaatAAGGATCCAGGATTGCAGGAAGTGCATGTTTAAAACTTCCACTAAGAAGTTTATATCATATGATAATATTATATAGATTCTCCTTGTGGATCTAGAAAAATCAACATGTCAAACTGTTGATAATACAATATGTATTTGTAtctaatataaacaataaaaatgatttcatTTGA

Function

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0010629 negative regulation of gene expression biological_process
GO:0032689 negative regulation of interferon-gamma production biological_process
GO:2000562 negative regulation of CD4-positive, alpha-beta T cell proliferation biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0030246 carbohydrate binding molecular_function
GO:0016936 galactoside binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060312-19 Predicted to enable carbohydrate binding activity and galactoside binding activity. Predicted to be involved in negative regulation of CD4-positive, alpha-beta T cell proliferation; negative regulation of interferon-gamma production; and positive regulation of gene expression. Predicted to be active in cytosol and nucleus. Orthologous to human LGALS9 (galectin 9); LGALS9B (galectin 9B); and LGALS9C (galectin 9C).

Ensembl:

ensembl_id ENSDART00000100185

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018351 lncRNA downstream 9302 31005981 ~ 31012712 (-) True XLOC_009333
TCONS_00019204 lncRNA downstream 97925 30923150 ~ 30924089 (-) True XLOC_009331
TCONS_00019203 lncRNA downstream 106753 30911402 ~ 30915261 (-) True XLOC_009330
TCONS_00018343 lncRNA downstream 173432 30844108 ~ 30848582 (-) False XLOC_009328
TCONS_00018339 lncRNA downstream 205507 30814066 ~ 30816507 (-) False XLOC_009327
TCONS_00018361 lncRNA upstream 139583 31166695 ~ 31167511 (-) True XLOC_009338
TCONS_00018395 lncRNA upstream 487094 31514206 ~ 31516514 (-) True XLOC_009359
TCONS_00018398 lncRNA upstream 558286 31585398 ~ 31587989 (-) True XLOC_009361
TCONS_00019205 lncRNA upstream 1386202 32413314 ~ 32433673 (-) True XLOC_009364
TCONS_00018405 lncRNA upstream 1606178 32633290 ~ 32634932 (-) False XLOC_009366
TCONS_00018350 mRNA downstream 21708 30994538 ~ 31000306 (-) True XLOC_009332
TCONS_00018349 mRNA downstream 21739 30987415 ~ 31000275 (-) False XLOC_009332
TCONS_00018348 mRNA downstream 32654 30987414 ~ 30989360 (-) False XLOC_009332
TCONS_00018345 mRNA downstream 37210 30861647 ~ 30984804 (-) False XLOC_009329
TCONS_00018347 mRNA downstream 37457 30864506 ~ 30984557 (-) True XLOC_009329
TCONS_00018353 mRNA upstream 5143 31032255 ~ 31043183 (-) True XLOC_009335
TCONS_00018354 mRNA upstream 27088 31054200 ~ 31067589 (-) False XLOC_009336
TCONS_00018356 mRNA upstream 43491 31070603 ~ 31109760 (-) False XLOC_009337
TCONS_00018357 mRNA upstream 43491 31070603 ~ 31147301 (-) False XLOC_009337
TCONS_00018358 mRNA upstream 45296 31072408 ~ 31147301 (-) False XLOC_009337
TCONS_00018344 other downstream 172851 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018322 other downstream 1144626 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018320 other downstream 1351708 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018305 other downstream 1635575 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018276 other downstream 2286973 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018355 other upstream 35445 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018367 other upstream 179326 31206438 ~ 31237395 (-) True XLOC_009339
TCONS_00018370 other upstream 272451 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018372 other upstream 288097 31315209 ~ 31315548 (-) True XLOC_009344
TCONS_00018378 other upstream 334675 31361787 ~ 31362141 (-) True XLOC_009348

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000093_01042275_01068202.mRNA False 1865 mRNA 0.41 10 CI01000093 1041650 ~ 1068202 (-)