RNA id: TCONS_00018357


Basic Information

Item Value
RNA id TCONS_00018357
length 3973
RNA type mRNA
GC content 0.49
exon number 19
gene id XLOC_009337
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31070603 ~ 31147322 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTCAAACAGCTGACAGAGGGCGAGACCTACGCGAGCGCTTCTCAGAGGCTTCACGGGATATTCATGCAACATCTGAGGCGGAACAAGCTGACAACACGTCCTGTCAGGCTGTCAAACCAGTCCACGACTATGTTTGACGAGTGCGTTTGCGCCCCAAACCAGTAACAAAACTTATCTAGACTAGGACTGTCACCTCCGTTTAGTTTACAACAGCATGTCTTTGCACTAGTGTTTTGCTGTAGTTCGAGCTCATGCCCCTAAAGCCGTGCCAATGCCGAGGAATGGAGACTAGCAGTGTATCTGGTAAAGTTGGAAAGATGGTCACAAGTGATGAGGAGCATTTGCAGTGCAGTAACGCAGGAATGGACGCGCTTCACCAATGTGAACTGATCCAGAGACTGATCGAGATCTCCATCTCTAGTCTGAAGGGGCTCCGGACCAAATGCGCCGCTTCAAACGACCTGACCCAACACGAAATACGTGCTTTAGAGGAGAAGCTGGTGAAGTACATCAGTAAGCAGCTGGACTGGAAGCGCAGTGTTGCAGAGAGAGATCGACCGCTGGCGCTGGACTCGTACCCAAACCTCACAGACTGGCTCTACACCATCAACCTCCGGCCAGAGATTATAGAGGCAGTCCCTGTGAAGCTCTCTCTGGATGCCCTGCTGCAGATGTCCAGTGGCCAGGTGGAAGAGAACATGAAGAGACTGGGCTCCAGCAGTGAAGAGTGTTCCCGTATCACGGCTGCCCTCTCCTGCCTCAAGAGCGCTACTGACACAGGTGTGGGACTTAAAAAAGAGGGCATCCCGTGGATAGCAGACCCCACTGAGCACGACAGCACCTCTGCTGACCCTCTTTCCTGTTCAATGCGTGCTACGTCTTACGGTCTCAAGCCCACCAGCTGGCCTTCTCCATCAGCTTTACCCCGGCTTCGCTCCTGTGTGTCCGTTTCCACTCTCCCTCCCTCAGATTTCCCAGTGGTTGTCTACACCCGCTGTGATGGGCTGACAGACCCCTTCTCATCCTCCCCACAGCTTAACTGCAATGTCTCAGGGTTGCTGTCCACTCCTCCAGTCACCCCACCACCCAAAAGATACGGCAAGCTCAAACCTTCACGAACTCCTCCACCTCCATCCCGCAAGCTGCTAAACCTCCTGCCCAGCATCACACTCACCCGCAGCAAGAGCCAGAGCCAGCTGGCCAACCGCATCGACGACCTGACACCCAACAAGAGTGGGAAGAAGAACAAGCCTCTCCTAAACGTGCAGGTGAACGGTGGAGCAAACGGATGGGAGGATTCACCATCTCGATCACCGCTGCTGTCTGCCCGCTCGCCCTGTCTCCCACCAAACACACCCAGCCACTTGACAGACCCTGCAGCTCTCAGAAATAATGTTACGACTCACGGAAGCTCTCCGCTAGTCATGAGAAAAGACATCGGCCTGGATGTCACACACAGGTTTTCCACCAAGTCGTGGTTGTCTCAGACGTGTCAGGTGTGCAAGAAGAACATGATGTTTGGTGTTAAATGCAAACATTGCAAGGTGAAGTGCCACAACAAATGTACCAAAGAAGCCCCTAAGTGCAGGATTTCATTTGCACAATtcccAAATAAGATCAGAAGAACAGAGTCTGTACCGTCAGGCATCAACAACCAGGTTGAGCGACCGGCAGAATCTCAGCAGTACGGGACATTACCAAAGGCCATAAACAAGAAGGATCACCCTCCATCACTGAGTCACCTGGACTCCAGTAGTAACCCATCCTCCACCACCTCCTCTACCCCCTCCTCACCCGCTCCCTTTGGCCAGAGCAACCCCCTGAGTGCCACCCCTCCACCAAACCCCTCGCCCAAGGGCTCAGCTGACAGCCGCTTTCACTTCCCAGatGTATCTAGTTCCTCACATTCAGAGGGCGGTTACACTGGAGAATCAGACCAGTTGGATGGTGTTGCAAGCCAATCGTCATCAGGCCACAGGGAAGATGTGGATGACGATCAGCAAGGAGACGACGCTCAGGATCAGGAAGGATCAGAGGAAGAATCTGAAGACGATGAAGTGGATGATCTGCCCAAATACAGCGGCCATTTTAAGGACTACATCAGCCGCAAAGCCAGCCAGACCAGTGTGGACCTGCGTGAATGGGACGTGCCTTTCGAGCAGCTGGAGCTTGGCGAGCTGATAGGTAAAGGCCGCTGGGGGAAGGTGTGCAGGGGCCGCTGGCATGGAGAGGTGGCCGTCCGATTATTAGAAATTGACGGTAACAACCAGGAGCATCTGAAACTGTTCAAGAAGGAGGTGATGAACTACCGGCAGACACGACATGAGAATGTTGTGCTGTTTATGGGGGCCTGCATGCACCCACCTCATCTGGCCATTATCACCAGCTTTTGTAAAGGACGGACGCTCTACTCAGTCGTCAGAGACTCTAAACTTGACATCAACAAAATTAGACAAATTGCTCAGGAAATCGTAAAGGGAATGGGTTACCTCCATGCAAAGGGAATCGTACACAAAGACTTAAAGTCCAAGAATGTCTTTTACGATTCAAACAAAGTAGTCATCACAGATTTTGGCCTGTTTGGGATGTCTGGAGTGGTTCAAGAGGACAGGAGAGAAAATGAGCTGAAGCTGCCACGAGGATGGATCTATTACTTGGCTCCAGAGATTGTGCGAAAGATTGGACCAGGAAACCAAGAAGACTGTCTGCCCTTTTCAAAAGCTGCTGATGTTTACgcctttggCACTATCTGGTATGAACTCCAGGCCAAAGCCTGGCCAATCATCAACCAGCCGACTCAAGTGTTGATCTATCAGCTGGGAAGTGGAGAAGGAATCAGATCTTTATTGACTACTAAGGGTACTAGCTTGGGCAAGGAGGTCACGGAGATCCTGTCAGCCTGCTGGTGTTTTAAAGCTGAGGACAGACCAACATTCACTCAGCTGTCAGACTTGCTGGAGAAGCTGCCAAAGCTCAACCGCAGACTCTCGCACCCGGGCCACTTCTGGAAGTCTGAGGACGTATGGCATCACCACTGTCTACGTGAGCACTGCAGTCCAGGCCTCCGCTCTCGTTGTCCATACGTCtacaaatatgacagtttatCCCCAGCTGCTGAAGGCATTAGCATGACTGCTGCGTTCAAAGAAAGCCACTGAGGCTAAATAGTAGTTTTATCCAGATGTCTGCTTCTATTCCATGTATTTACTATAGATCAAGGGTGTCCaaattcagtcctggagggccggtttcctgcTTAGTTTAGCTAtagcttccttcaacacacctccctggaagtttctagtacacctaagagcttgattggctaaTTCAAGTGTGTTGAATTGCGGTTGGAACTaaattatgcaggacaccggccctcctggactgagTTTGGAAACCCCTACTATAGATGGAGTGTGTTTTGCCGTGTTCATctttgtgttgctcttttagcCCAAAGTATATTTTAGTTTATCATCATCAAGACTGTTCAGCCAAATTGTATGCACTTTTTCAATTTGTGTGCCCTAATTAGTTTGTCCACAAGGTGGAAACACTGGTCCTAGCTGTTGTTTAACATCCGGAAAAAGACTACAAACTACTTTTTAGTTACATTAGTAGACATAGTGTAATTTTTTTACAAGCagtaaataattgtttgatttcaAAGCTTGTTTTATTGCGTTTAACCACACTCATCGTTGATATTATGATATTTAATATATGatattaaaagtttaaattgTAACCTGCGCTCTTGTCAAAATTTGAACCCAAGAAGACAACAAGAGGACATTTTATGTAGTCTGTATTGGCCCCCTTcagtatttgctttgttttatcttCAGTTGATGTCATAATGTTTTAATGTCGGAGCTACAACAGGATTAAACAAAATTATACACAGTGTTGGAATATCGAGCCAATATCGagcgtgttcaataaaaaaaggtcAGGAAAGGGGTTTT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007265 Ras protein signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-45 Predicted to enable protein kinase activity. Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in breast adenocarcinoma. Orthologous to human KSR1 (kinase suppressor of ras 1).

Ensembl:

ensembl_id ENSDART00000157145

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018351 lncRNA downstream 57891 31005981 ~ 31012712 (-) True XLOC_009333
TCONS_00019204 lncRNA downstream 146514 30923150 ~ 30924089 (-) True XLOC_009331
TCONS_00019203 lncRNA downstream 155342 30911402 ~ 30915261 (-) True XLOC_009330
TCONS_00018343 lncRNA downstream 222021 30844108 ~ 30848582 (-) False XLOC_009328
TCONS_00018339 lncRNA downstream 254096 30814066 ~ 30816507 (-) False XLOC_009327
TCONS_00018361 lncRNA upstream 19394 31166695 ~ 31167511 (-) True XLOC_009338
TCONS_00018395 lncRNA upstream 366905 31514206 ~ 31516514 (-) True XLOC_009359
TCONS_00018398 lncRNA upstream 438097 31585398 ~ 31587989 (-) True XLOC_009361
TCONS_00019205 lncRNA upstream 1266013 32413314 ~ 32433673 (-) True XLOC_009364
TCONS_00018405 lncRNA upstream 1485989 32633290 ~ 32634932 (-) False XLOC_009366
TCONS_00018354 mRNA downstream 3014 31054200 ~ 31067589 (-) False XLOC_009336
TCONS_00018353 mRNA downstream 27420 31032255 ~ 31043183 (-) True XLOC_009335
TCONS_00018352 mRNA downstream 43491 31022014 ~ 31027112 (-) True XLOC_009334
TCONS_00018350 mRNA downstream 70297 30994538 ~ 31000306 (-) True XLOC_009332
TCONS_00018349 mRNA downstream 70328 30987415 ~ 31000275 (-) False XLOC_009332
TCONS_00018360 mRNA upstream 14482 31161783 ~ 31177324 (-) False XLOC_009338
TCONS_00018362 mRNA upstream 40715 31188016 ~ 31237362 (-) False XLOC_009339
TCONS_00018363 mRNA upstream 40717 31188018 ~ 31213119 (-) False XLOC_009339
TCONS_00018364 mRNA upstream 40949 31188250 ~ 31237473 (-) False XLOC_009339
TCONS_00018366 mRNA upstream 41133 31188434 ~ 31237473 (-) False XLOC_009339
TCONS_00018355 other downstream 3197 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018344 other downstream 221440 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018322 other downstream 1193215 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018320 other downstream 1400297 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018305 other downstream 1684164 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018367 other upstream 59137 31206438 ~ 31237395 (-) True XLOC_009339
TCONS_00018370 other upstream 152262 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018372 other upstream 167908 31315209 ~ 31315548 (-) True XLOC_009344
TCONS_00018378 other upstream 214486 31361787 ~ 31362141 (-) True XLOC_009348
TCONS_00018396 other upstream 400433 31547734 ~ 31547852 (-) True XLOC_009360

Expression Profile

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