RNA id: TCONS_00018360


Basic Information

Item Value
RNA id TCONS_00018360
length 3474
RNA type mRNA
GC content 0.44
exon number 9
gene id XLOC_009338
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31161783 ~ 31177324 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCGTTTGGACGTTTACAGCCATTACAATACACAGAATCCACGCAGAGAGCACCGCTGTTTGAGGAAGCCGGAATATTTACATCCtaatttaagtttaaaattaGTTTCAATTAAACTCGAGTTGGACTTCAAACATTGTACATCTGCCTTTTTAAGCAGTCGCGTTTGTAAATATAGCCAGCGTTGCGTCGACGTGAGACGCTCCGGATTCCCAGGCGTCTGACTGACTAAAGACACGCTCGCGGCATCCTGAGCGTTTTTTCCGTATATATTTGAACGTCTTTATTTCGATAACCAGGGACATTTAGATTTAAGAGACCCGCTTCGATTTAGATGGCAAGCTTCCCAGATTGTGTCAACGAAAATGAAATAGGTAAAGCTAAGTTCATTGGGGAACTCATACCTCCTGTTGCTCCCTTTGACCAAAAGTCTGGACGGGAGACATGGACTGTAGCTTTTGCACCTGATGGTTCCTACTTTGCTTGGTCTCAAGGACATCGGATTGTGAGACTTGTACCATGGAAAAAATGCTTAGCCAGCTTTTCTGTAAGGAAGGAAGATCGGTCGAGTGGTGCAGGTCCTCGAAGACTCTCTCGGCAGAACAGTGAGGGCAGTTTGCTGCCAGGCGAGCCCAGGGAGCACACCATTGACTGTGGCGACATTGTGTGGGGTCTGGCCTTTGGCTCTTCCGTACCTGAGAAGCAAAGTCGCTGTGTTAATATTGAATGGCACCGGTTCAAGTTCGGCCAGGACCAGCTCTTGCTGGCTACAGGCCTCAACAATGGCCGCATCAAAATCTGGGATGTATATACAGGAAAGCTTTTGCTGAACCTGATGGATCACACAGACATTGTGCGAGACCTGACATTTGCCCCGGATGGAAGTTTAGTACTGGTCTCTGCCTCAAGAGACAAAACTCTACGCGTGTGGGACCTCAAAGATGACGGTAACATGGTGAAAGTACTCCGTGGCCATCAAAACTGGGTCTACTGCAGCGCTTTCTCACCTGATTCATCTGTCCTTTGTTCTGTGGGCGCTGGCAAAGCGGTCTTCCTGTGGGACATGGATAAATACACTCTGATCCGTAAGCTGGAGGGCCATCATAATGATGTTGTGTGTTGCGAGTTTTCTCCAGATGGGGCTTTACTGGCCACAGCCTCCTATGACACCCGCGTCATAGTTTGGGACCCTCATACAGCCACAGTTTTACTCGAGCTGGGGCATCTTTTTCCTCCTCCCTCACCCATATTTGCTGGAGGGGCAAATGACCGATGGGTTCGCTCTGTTGCTTTTTGTCACGATGGTCGGCACATTGCCAGCGTCACTGATGACAGGCTGGTGCGTTTCTGGAGTATCGATGAGAAGAGTCCTCAAGCCATCGGCCCCCTCACTAATGGCCTCTGTTGTGCCTTTTCTACTGACGGAAGTGTCTTATCTGCTGGGTCCCGGGATGGCAGTGTGCATTTCTGGGCTTCTCCACGCAGTATCGCCAGCCTTCAGCACCTGTGCCGAATGACCCTGCGACGAGTCATGCCCACTCAGCAGGTTTACACGCTGCCCATTCCCTTTTCCATGCAGGACTACCTGGCCTACAAAACGCTTTAACTAGCAACACAAACCACAGCACTCTCTCAAATGTTTTTTCTGCTCATACAGACCATTAGATGACAGCGAGGTCTGttctttttgtatttatttttttgtattatttggaCAATATTCTTACCTTCAAGCCCATATCAGGTAGCGGCCTTTAGAAAGCCTTAATATATCAGCGGACCACATTTTGATTTgcaattctttcttttttcatctgGCACAACTTGTATAGCACCTTATAGCTAGGTGAATGTGGTGCTTTTAGCTCCTCCACCGAGTTTAAAGCGATGTGATGGGGGAATAATGTCTCCCCAATGTTCTGCAGTGTTTTTCTTTGTCTGTGCTGGCTGTGTGAAGGATTGAAGGGAAGATACAATGTGAACGCATGTATGTGTGAGTGCGTGTGCTAGATTGAAGATAGGTTGGTAGTTCAGGGACACAGGCAGTGCCTCCCCTTTACGTGCCTCTTTAGACAAAATACACTCGCTTAACGGTGCTTCAGTAATGACCTTCTGTTCAACAACACAATCCTAAAACTACAGTAACGCACACGGGCTTACTTTTTTCTTcagaaattgtatattttttacgTGTACAGAGATTTGTAAAGGCATgttattgagtgtgtgtgtgtttatataaatacaaatcttTGTATAAATATTctaagtatatataaatatatatatgtagctTCATTTTTTCCAGCGCTTTCATCCATAGCTGTATTAAAGTTAGCTCTTTTTCTCTTGTGCGATGATGGGTTGTAGCAGAGTTGCACAACAGGTTGCTTTGAGGAGAATCTGGCAACCAGTTCAATGATGTATTCCAGTAGCAAAACCACATTTGATTTCTTATTCCGAACAATTTACCATCAACTTTGCTGTTTGGCACTGTAACAGTGCTTGGGATGCATTGCATTGTCCTAGTGTTtccccacatacacacacagttcacTCTTGTGCACTGTAGATGTTGGCTATGTGCAATTTAACAGAGAGCCAACTTGGTTTCATTTGGGCATGTCTCATCTACCTCTCATTTTGGAGAACTGAAAATATTGATGGTTTATTGGAAGAAAAGCATCCTGATTCTGTTTATTGATCCATTTATGCGTTATATGACCTTTGCCTGTCAGCTTAATGCAATCACATAGTCTTATTAATGTGCACTGTAAAACGTTTCACATCGGTTATGCTTATAAACTCAAGTTTACCAGCTGCCTTGTAAATTGGAGTCAACTCAACTAAGAGAGATTCTTTGTTTTAACTGAACTCACAGCAAAACTTAACATCTTGAGTTGAAACGGAATCTCTCTAAACTGAGTGGACTCACATTTTCAAGGCAGCTGGTGAACTTGAGTTTGTAAGTATAAGCGATGTGAAaggttttacagtgtgggaaTCTGAAGTGGCATGTTGATCTAGTCATGCTGGCAAAGAGTCTCTGCAATAAAAACTAAAAGTGTTCATAAAGCCGATGCCAAAGATCCCCGCTTATTGATGAGATTGGCGCAGTCGGGGTTCTCTTTCCTTCTTCCTCCATTTATGGCGAAAACTTGAAAGTCTTTTTTGTATTCGTAAGTCTGCTGTTATGCTTGAGTGTATGAAGAATGCTTATGTGAAGTAGAAAGATGCGTAGATGCACCAGGATGTTGTGGTAGTGTTTTCAGTCGGGTTGTAGAGATGTTTGGAAAGTAGTCAGTTTGTCCAGCTGTTTCAGGCAGAATACCTTATGCTGTTCCCAATTCGTCAAAAGGAAAAGTCATCTGACAAGaatgtacttttttttctgtCCTCCAAAAGTTggagtttctgtttgtttgtttgtttgtttatttgttttgattgtcagaataaagtattttaattCA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-1946 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Is expressed in several structures, including digestive system; eye; fin; heart; and spleen. Orthologous to human WSB1 (WD repeat and SOCS box containing 1).

Ensembl:

ensembl_id ENSDART00000008854

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018351 lncRNA downstream 149071 31005981 ~ 31012712 (-) True XLOC_009333
TCONS_00019204 lncRNA downstream 237694 30923150 ~ 30924089 (-) True XLOC_009331
TCONS_00019203 lncRNA downstream 246522 30911402 ~ 30915261 (-) True XLOC_009330
TCONS_00018343 lncRNA downstream 313201 30844108 ~ 30848582 (-) False XLOC_009328
TCONS_00018339 lncRNA downstream 345276 30814066 ~ 30816507 (-) False XLOC_009327
TCONS_00018395 lncRNA upstream 336882 31514206 ~ 31516514 (-) True XLOC_009359
TCONS_00018398 lncRNA upstream 408074 31585398 ~ 31587989 (-) True XLOC_009361
TCONS_00019205 lncRNA upstream 1235990 32413314 ~ 32433673 (-) True XLOC_009364
TCONS_00018405 lncRNA upstream 1455966 32633290 ~ 32634932 (-) False XLOC_009366
TCONS_00019206 lncRNA upstream 1455966 32633290 ~ 32635777 (-) False XLOC_009366
TCONS_00018359 mRNA downstream 14461 31073322 ~ 31147322 (-) True XLOC_009337
TCONS_00018357 mRNA downstream 14482 31070603 ~ 31147301 (-) False XLOC_009337
TCONS_00018358 mRNA downstream 14482 31072408 ~ 31147301 (-) False XLOC_009337
TCONS_00018356 mRNA downstream 52023 31070603 ~ 31109760 (-) False XLOC_009337
TCONS_00018354 mRNA downstream 94194 31054200 ~ 31067589 (-) False XLOC_009336
TCONS_00018362 mRNA upstream 10692 31188016 ~ 31237362 (-) False XLOC_009339
TCONS_00018363 mRNA upstream 10694 31188018 ~ 31213119 (-) False XLOC_009339
TCONS_00018364 mRNA upstream 10926 31188250 ~ 31237473 (-) False XLOC_009339
TCONS_00018366 mRNA upstream 11110 31188434 ~ 31237473 (-) False XLOC_009339
TCONS_00018365 mRNA upstream 11110 31188434 ~ 31237473 (-) False XLOC_009339
TCONS_00018355 other downstream 94377 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018344 other downstream 312620 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018322 other downstream 1284395 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018320 other downstream 1491477 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018305 other downstream 1775344 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018367 other upstream 29114 31206438 ~ 31237395 (-) True XLOC_009339
TCONS_00018370 other upstream 122239 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018372 other upstream 137885 31315209 ~ 31315548 (-) True XLOC_009344
TCONS_00018378 other upstream 184463 31361787 ~ 31362141 (-) True XLOC_009348
TCONS_00018396 other upstream 370410 31547734 ~ 31547852 (-) True XLOC_009360

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000093_01136960_01147480.mRNA True 1199 mRNA 0.56 7 CI01000093 1136960 ~ 1147480 (-)