RNA id: TCONS_00018366


Basic Information

Item Value
RNA id TCONS_00018366
length 1894
RNA type mRNA
GC content 0.50
exon number 11
gene id XLOC_009339
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31188016 ~ 31237473 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCTGCGGCTGTAGTCTTTCTCTCTGTCCGCTAGGCGGCCGTGTGGCTCTTTGTTCACCCACACAGAGATTGTGGCTGTGACAGATTTTTTCCCATCTCTTTGATTCATCCTGATACACAACAACACACTGGCTGCTAGTTCCCTTTCAGTGGGGATTTCAGGCGCTGAGCATGAACACGCCGACTGGGTCCCAATCGGTGTCGACAGAGATGATGTACGCCGATGTATACAGTCTTTTAAAGCCCAAGGAAATGAGCGACTAGTGTTTATATTTAGGATAAAGGGGAAAACGGGACGGATTGGGAACGTGCGCTGTGGAGTCTGCTTCTGTTCACCTAGACTCTTTGATACGGGGTGTTAGTGACGGGTCAGACACATACTTCACAACAGGAAGTGAGAGTCTTCAGCAGGAAGAtttgagCAGAGCTAATGGGGAGATCACGCAGTGGGACACAAAGCTAAAGCGCTCAAGACCAGACCGTCTACTTCCCTCGTGCCGGTGACTCCGTGCTGTCGTGTTGGATGCAGCTTAACAAGCAGAAGAAGAGAAGGAAAGGATTTCTCTCGCTCCAGTGGACTAGATTCTTTATAGTATGATGAAAAAGTGAACTTGCATACTTCCACAAACCAAAGAAACACGTgagagaaacacacagagaagTTTTGTGGGAGACATCAGACACCATCGTTTCCCTTGTGGCGTGGTCGGTCTGGAAGGAAAACGGGGCTCCTGCAGGATGACCAGTCTTTTCCGACGCAGCAACAGTAATGGAGGGTCTCGGGGTGGCGGGGGCTCGGCTGCAGGCGAGCTCAACAACTCTAGGCCCAACCGGCAGGTTCGACGGCTGGAGTTCAACCAGGCTATGGAGGACTTCAAAACCATGTTTCCTACCATGGACTATGAGGTGATCGAGTGTGTACTGCGCTCCAATAATGGTGCTGTGGACGCCACCATCGACCAGCTCCTGCAGATGAGCATTGACGGGCAAGGCTCAGATGACAGCTCAGATTCAGATGACAGCATCCCGCCAGAGattcTTGAACGAACCCTCGAGCCAGACAGCTCAGATGAAGAGCCACCACCTGTCTATTCACCACCAACATatgacatgcatatatatgaCCGGAAATACCCTGAAGCTCCTCCTGTTCCTCCACCCAGATTTGAGGCCCAGCCTCCCCCTGGACACAGGCAAGTACAAGGTTACAAAAACTGGAACCCACCATTACTTGGCAATCTGCCTGATGACTTCCTGCGAATCCTGCCTCAACAGTTAGACAGTATACAGGGCTCTCAGAGTAGCACCTCTAACCcttcctcctccacctcctcctcgtCCACCACAATAGCCCAGAAAGTGGTGGCTGCAGCGGGAACAGCCGCCGGGGCTTCAGAGCAGGAGCGCAAACTAAAGCAATATTTGGAAGATGAACGTATTGCTCTCTTCCTGCAAAACGAAGAGTTCATGAAGGAGCTGCAGAGGAACCGTGAGTTCCTTATTGCGTTGGAAAGAGATCGATTGAAATACGAGTCAAAGAAATCCAAATCCAGTCATTCATCAGCTAGCATGGAGAACTCCTCAGGTGACCACTATGCTTCTGGATCTGTAGAGGCCAGCACAGATGATGCTCTCTTCAGAGACAAGCTAAAGCACATGGGCAAATCAACCAGGAAGAAGCTGTTTGAAATTGCCAGAGGTTTCTCAGAGAAGACGAAGCGGAGGAAGTCTAAAAGGAGAACGCTGCTAAGACATCATTCATTGGGCACAGCCAACTCCACTGCCAACCTTCTAGACGATGTAGAAGGAAACCCATGTGatgaagaacgTCAGCTTAGACGATTGGCTGCACAGGAAGAGGAGGAGCCACAAAAGGAACCACTATCATGGTAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-29 Predicted to enable ubiquitin binding activity. Orthologous to human CUEDC1 (CUE domain containing 1).

Ensembl:

ensembl_id ENSDART00000182139

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018361 lncRNA downstream 20923 31166695 ~ 31167511 (-) True XLOC_009338
TCONS_00018351 lncRNA downstream 175722 31005981 ~ 31012712 (-) True XLOC_009333
TCONS_00019204 lncRNA downstream 264345 30923150 ~ 30924089 (-) True XLOC_009331
TCONS_00019203 lncRNA downstream 273173 30911402 ~ 30915261 (-) True XLOC_009330
TCONS_00018343 lncRNA downstream 339852 30844108 ~ 30848582 (-) False XLOC_009328
TCONS_00018395 lncRNA upstream 276733 31514206 ~ 31516514 (-) True XLOC_009359
TCONS_00018398 lncRNA upstream 347925 31585398 ~ 31587989 (-) True XLOC_009361
TCONS_00019205 lncRNA upstream 1175841 32413314 ~ 32433673 (-) True XLOC_009364
TCONS_00018405 lncRNA upstream 1395817 32633290 ~ 32634932 (-) False XLOC_009366
TCONS_00019206 lncRNA upstream 1395817 32633290 ~ 32635777 (-) False XLOC_009366
TCONS_00018360 mRNA downstream 11110 31161783 ~ 31177324 (-) False XLOC_009338
TCONS_00018359 mRNA downstream 41112 31073322 ~ 31147322 (-) True XLOC_009337
TCONS_00018357 mRNA downstream 41133 31070603 ~ 31147301 (-) False XLOC_009337
TCONS_00018358 mRNA downstream 41133 31072408 ~ 31147301 (-) False XLOC_009337
TCONS_00018356 mRNA downstream 78674 31070603 ~ 31109760 (-) False XLOC_009337
TCONS_00018368 mRNA upstream 6552 31244025 ~ 31265375 (-) True XLOC_009340
TCONS_00018369 mRNA upstream 44747 31282220 ~ 31287970 (-) True XLOC_009341
TCONS_00018371 mRNA upstream 74243 31311716 ~ 31313932 (-) True XLOC_009343
TCONS_00018373 mRNA upstream 79885 31317358 ~ 31319276 (-) True XLOC_009345
TCONS_00018374 mRNA upstream 82544 31320017 ~ 31323932 (-) True XLOC_009346
TCONS_00018355 other downstream 121028 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018344 other downstream 339271 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018322 other downstream 1311046 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018320 other downstream 1518128 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018305 other downstream 1801995 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018370 other upstream 62090 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018372 other upstream 77736 31315209 ~ 31315548 (-) True XLOC_009344
TCONS_00018378 other upstream 124314 31361787 ~ 31362141 (-) True XLOC_009348
TCONS_00018396 other upstream 310261 31547734 ~ 31547852 (-) True XLOC_009360
TCONS_00018399 other upstream 825819 32063292 ~ 32063409 (-) True XLOC_009362

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000093_01155146_01166220.mRNA True 2288 mRNA 0.49 14 CI01000093 1154778 ~ 1166220 (-)