RNA id: TCONS_00018368


Basic Information

Item Value
RNA id TCONS_00018368
length 1661
RNA type mRNA
GC content 0.55
exon number 5
gene id XLOC_009340
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31244025 ~ 31265375 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAATGGTTTGGCCCTCGGGGTTACAGGAAGTTGTAGCAGCTGCCATGTTTAGCTGCTTTGTTGTAGATTTCTTGTAGGTTTCCTGCAGATTTTTTTAAGTGTTGCAATGGAGCCGAGCTGgagttcatttttatttcagCAGGCCAATGAAGCCCTCCACCACCAGCATCAGGTCAATCAGAACAGCCTGCTGCCTCTGCTCAACTCTGAGCCGCAGGATCAAAAGCCTGTTCTCCCCATCCCGCTGGACCAGAAGCCCCCAATCATTTCATCCGACCTCCTCAAAGACAACTTGGGTGGCGGAACGGGTGGAGGAGGAGGCGGCGGAGGTGGGGGTCCGGTGGTCATAAAAAAAGAGCCCAAATCAAAAACACCCTTCATATGCAGCTACTGCAGCAAGGCCTTTCGGGACAGTTACCACCTCCGACGGCACGAGTCTTGTCATACAGGCATTAAGATGGTGTCCCGGCCCAAAAAGACCACCACAGCGCCCACCATGGTGCCTCTCATTTCCACTGTGCCACGCGACAACAACGGAAACCCATCTTATGTGTCAACAGTGGCGGGCATCCTCACCACAGCAACCACCTCAGCATCCACAGCCGCAGGCATCATGTCAGTTCTGCCCCAACAGCAGCCAACCGTGCCCAAAAAACCCCCCAAACCGGTAAAGAAGAACCACGGCTGTGAGATGTGCGGCAAGGCCTTCCGGGATGTCTACCACCTCAACCGGCACAAGCTCTCGCACTCGGACGAGAAGCCCTTTGAGTGCCCTATATGCCACCAGCGCTTCAAGAGGAAGGACCGCATGACGTACCATGTGCGCTCGCATGATGGCGGCGTGCACAAGCCCTACATCTGCTCCGTTTGTGGGAAGGGCTTCTCTAGGCCGGATCATCTTAGCTGTCATGTCAAACATGTACACTCCACAGAACGACCCTTTAAATGCCAAGTAACGGCCTGCACATCTGCCTTCGCCACCAAAGACCGTCTGCGTTCACACATGATACGACATGAAGGCAAAGTCACCTGCAACATCTGTGGGAAGATGCTGAGCGCCGCCTACATCACCAGCCACCTCAAGACCCATGGCCAGACCGGCTTCACCTCGACCTGTAACAAAGACTCTAACAACGTGTGCAACTCTGCCTCAGCCACACCGGTCACTGCCTCAACCGCGTCCAACACTACGGCCATGATCCGCGGCAGCGCCAGCAACCCCGTCACCATCGCCGCCCAGATGAACATCACCACCAACACAGTCAACATCACGTCCCCTGTCAGCCTTCAACACCCGGTCACCATCACTGCCCCCGTCAACATCGCCTCAGTCAACATCCCGGCCTCGGCACCCATGAACATCGCCCATCCTGTCGCCATCACCTCGCCCATGTCAATGAACATCACCGGGCCGCTCAACATCGCCATGAGGCCCATGGAAAGCATGCCTTTCCTCTCGCAGGTCTTGCCTTCCACTCCTCCCTGGTAGAGCCCAAATGTCCTATCCCGGGCCATATTAGTCTTCCTCTCCTGCTGCGAGGGGTGAAAAAGGCGACTTTAGGAAAATGGCGGTCTGCAGCGAGGAATCATGCGGATTATAGCTGGCACTTTGCGTCTCCAGATTGTTTAGAGTTTAGTTGacggacagaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-121 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human VEZF1 (vascular endothelial zinc finger 1).

Ensembl:

ensembl_id ENSDART00000086592

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018361 lncRNA downstream 76514 31166695 ~ 31167511 (-) True XLOC_009338
TCONS_00018351 lncRNA downstream 231313 31005981 ~ 31012712 (-) True XLOC_009333
TCONS_00019204 lncRNA downstream 319936 30923150 ~ 30924089 (-) True XLOC_009331
TCONS_00019203 lncRNA downstream 328764 30911402 ~ 30915261 (-) True XLOC_009330
TCONS_00018343 lncRNA downstream 395443 30844108 ~ 30848582 (-) False XLOC_009328
TCONS_00018395 lncRNA upstream 248831 31514206 ~ 31516514 (-) True XLOC_009359
TCONS_00018398 lncRNA upstream 320023 31585398 ~ 31587989 (-) True XLOC_009361
TCONS_00019205 lncRNA upstream 1147939 32413314 ~ 32433673 (-) True XLOC_009364
TCONS_00018405 lncRNA upstream 1367915 32633290 ~ 32634932 (-) False XLOC_009366
TCONS_00019206 lncRNA upstream 1367915 32633290 ~ 32635777 (-) False XLOC_009366
TCONS_00018364 mRNA downstream 6552 31188250 ~ 31237473 (-) False XLOC_009339
TCONS_00018366 mRNA downstream 6552 31188434 ~ 31237473 (-) False XLOC_009339
TCONS_00018365 mRNA downstream 6552 31188434 ~ 31237473 (-) False XLOC_009339
TCONS_00018362 mRNA downstream 6663 31188016 ~ 31237362 (-) False XLOC_009339
TCONS_00018363 mRNA downstream 30906 31188018 ~ 31213119 (-) False XLOC_009339
TCONS_00018369 mRNA upstream 16845 31282220 ~ 31287970 (-) True XLOC_009341
TCONS_00018371 mRNA upstream 46341 31311716 ~ 31313932 (-) True XLOC_009343
TCONS_00018373 mRNA upstream 51983 31317358 ~ 31319276 (-) True XLOC_009345
TCONS_00018374 mRNA upstream 54642 31320017 ~ 31323932 (-) True XLOC_009346
TCONS_00018375 mRNA upstream 65981 31331356 ~ 31364729 (-) False XLOC_009347
TCONS_00018367 other downstream 6630 31206438 ~ 31237395 (-) True XLOC_009339
TCONS_00018355 other downstream 176619 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018344 other downstream 394862 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018322 other downstream 1366637 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018320 other downstream 1573719 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018370 other upstream 34188 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018372 other upstream 49834 31315209 ~ 31315548 (-) True XLOC_009344
TCONS_00018378 other upstream 96412 31361787 ~ 31362141 (-) True XLOC_009348
TCONS_00018396 other upstream 282359 31547734 ~ 31547852 (-) True XLOC_009360
TCONS_00018399 other upstream 797917 32063292 ~ 32063409 (-) True XLOC_009362

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000093_01189004_01193556.mRNA True 1369 mRNA 0.48 4 CI01000093 1188547 ~ 1193673 (-)
bowfin (Amia calva) AMCG00005560 True 4334 mRNA 0.46 6 CM030142.1 3850136 ~ 3868456 (-)