RNA id: TCONS_00018375


Basic Information

Item Value
RNA id TCONS_00018375
length 897
RNA type mRNA
GC content 0.36
exon number 9
gene id XLOC_009347
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31331356 ~ 31366742 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atattaaatattgcaataatatattttataTCTGTAATTGGGAACTCTGTAGTTCTTCTCATTATAGCTCTTGAGAGGAATCTGCACAGTGCAAAGTACATTGGTGTGTTTAACTTGGCCTTGGCTGATATTGGTGAAACTAGTGCTCTGATTCCTAACATGATGAAGAATTTTCTGTTTGACTCTCAGTACATCTCCTATAATGGTTGCATGGCAAATATGTTTTTTGTGTTCCTCTTTAGTTCCATGCAAAGTTTCACTCTTGTTGTTATGGCATATGATCGTTTAATTGCAATTTGTTTGCCGCTAAGATATCATGCTATTGTCAATAATACCAGTATGATTTTAATGACTTTAGCAATTTGGGCATTTAATACTTTTGTGGTGGCCTTGATGGTGTCTTTGATCAACCGACTTTCATTCTGTGAATCCAATATGATACAGAGTTATTTTTGTGATCACGGGCCAGTTTTTAGGTTGGCTTGTAATGACAATAGCATGAATAAGATTATGGCATATGTCATTTCAGTTCTGTACATTTTAGCACCAATGGTCGTTATCGTCTTTTCATATCTGGCCATTTTTCTTGCTTTAATCAAAATCACAACTTGGGAAGGACGATTAAAAGCACTGAAGACCTGTGTGTCTCACCTGTTGTTAGTGGGAATATTTTTCCTCCCTGTATGCTGCACATACATTGCACAaaaaatatttgtagtccAGGGTGTCAATTTCTTGACCGGAGGCTGCACAGTGCAAAATGCAATTCCACCAATGCTAAATcctattatttatgttttaaacacAGGTGAAAacaaaaacaacatggtAAAATTTTTTAACCAGGCCAAGATATCATGCAAAATCATCAAAACCAAGGTTGGTGCACTTCATCAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010308-19 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in olfactory rosette.

Ensembl:

ensembl_id ENSDART00000185386

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018361 lncRNA downstream 163845 31166695 ~ 31167511 (-) True XLOC_009338
TCONS_00018351 lncRNA downstream 318644 31005981 ~ 31012712 (-) True XLOC_009333
TCONS_00019204 lncRNA downstream 407267 30923150 ~ 30924089 (-) True XLOC_009331
TCONS_00019203 lncRNA downstream 416095 30911402 ~ 30915261 (-) True XLOC_009330
TCONS_00018343 lncRNA downstream 482774 30844108 ~ 30848582 (-) False XLOC_009328
TCONS_00018395 lncRNA upstream 149477 31514206 ~ 31516514 (-) True XLOC_009359
TCONS_00018398 lncRNA upstream 220669 31585398 ~ 31587989 (-) True XLOC_009361
TCONS_00019205 lncRNA upstream 1048585 32413314 ~ 32433673 (-) True XLOC_009364
TCONS_00018405 lncRNA upstream 1268561 32633290 ~ 32634932 (-) False XLOC_009366
TCONS_00019206 lncRNA upstream 1268561 32633290 ~ 32635777 (-) False XLOC_009366
TCONS_00018374 mRNA downstream 7424 31320017 ~ 31323932 (-) True XLOC_009346
TCONS_00018373 mRNA downstream 12080 31317358 ~ 31319276 (-) True XLOC_009345
TCONS_00018371 mRNA downstream 17424 31311716 ~ 31313932 (-) True XLOC_009343
TCONS_00018369 mRNA downstream 43386 31282220 ~ 31287970 (-) True XLOC_009341
TCONS_00018368 mRNA downstream 65981 31244025 ~ 31265375 (-) True XLOC_009340
TCONS_00018380 mRNA upstream 6461 31371190 ~ 31372486 (-) True XLOC_009349
TCONS_00018381 mRNA upstream 17286 31382015 ~ 31383588 (-) True XLOC_009350
TCONS_00018382 mRNA upstream 24674 31389403 ~ 31390985 (-) False XLOC_009351
TCONS_00018383 mRNA upstream 25008 31389737 ~ 31390760 (-) True XLOC_009351
TCONS_00018384 mRNA upstream 35194 31399923 ~ 31401361 (-) True XLOC_009352
TCONS_00018372 other downstream 15808 31315209 ~ 31315548 (-) True XLOC_009344
TCONS_00018370 other downstream 31678 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018367 other downstream 93961 31206438 ~ 31237395 (-) True XLOC_009339
TCONS_00018355 other downstream 263950 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018344 other downstream 482193 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018396 other upstream 183005 31547734 ~ 31547852 (-) True XLOC_009360
TCONS_00018399 other upstream 698563 32063292 ~ 32063409 (-) True XLOC_009362
TCONS_00018418 other upstream 2298326 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018421 other upstream 2341951 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018452 other upstream 2914692 34279421 ~ 34279535 (-) True XLOC_009383

Expression Profile

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