RNA id: TU432093


Basic Information

Item Value
RNA id TU432093
length 794
lncRNA type read_through
GC content 0.36
exon number 2
gene id G378069
representative True

Chromosome Information

Item Value
chromosome id CI01000185
NCBI id null
chromosome length 228139
location 25963 ~ 60834 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTAGTACGCAGATAGTACAGATTACACGTTTTACAATTAAAATCAACAAATTGTTGTGCATTAAGTGAAATAAAAAGTGTTAGTTAGGACAACTGTTAGATGAGACATGAGTCCTGTAGAGCTCCAATTCTAATCAAGCACCTTCATGACAGTCTTCAGGATCACTTAATGAGCAGCAGGTGTGTAGGTGCAGGTTTACGATTAAACTCTGCAGGACAGGAGCTGACGTGAAGAGCCATGATCAAGTGAATAGAGAGAAAGAGAAATGCAGAAACCACTTCACATATACTACAGAAGACAAGGGCTAATTTTTTGGCTCATCAATAATATTTAAATCTGTTTCACATGACATGACACCGTTTTTCTTGTTTCTTTTTCTCTTCATATAGTTGTACAAGTCTCTTCTTGAACTCTTCTCTCTTAATGAAATCATTCAGTTCTTCTTCTTGTTTTCTGGCCTCATCTTGATGTTTCTTCTTCATCTCCTCTATTTCCTCTTCATGTTTCTGTTCAATTTTTTGACATTTTTTTTCTTCTCTTTCCATTCTTTCTCTCTCCTCTCTTTCTCTTCTTTCGATCTCTTCTTCTTGATCTTGTTTCAGATCTTCCATCATTTTCTCCCATCTATTTCTCTTCTCCCTTCTTCTCTCTTCATCCTCTTGTTTTCTTCTCTCCCACTCCTCTTTCCTCTCTCGCTCCAGCTGCTCATAACGTCTTTTCATTTCATTTCTCTCTTCCTCTTTTTCTTCTCTCTCTCTTTTCTGTTTTTCNNNNNNNNCCTCTATCATTTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432121 lncRNA upstream 29777 90611 ~ 94556 (-) True G378086
TU432092 lncRNA upstream 73238 142176 ~ 142213 (-) True G378068
CI01000185_00015550_00020227.mRNA mRNA downstream 5736 15126 ~ 20227 (-) True CI01000185_00015550_00020227
CI01000185_00004801_00013583.mRNA mRNA downstream 12380 4574 ~ 13583 (-) True CI01000185_00004801_00013583
CI01000185_00107906_00156757.mRNA mRNA upstream 46822 107656 ~ 157424 (-) False CI01000185_00107906_00156757
CI01000185_00193329_00212613.mRNA mRNA upstream 130859 191693 ~ 215393 (-) True CI01000185_00193329_00212613
TU432101 other upstream 86315 147149 ~ 169662 (-) True G378075

Expression Profile