RNA id: TCONS_00018631


Basic Information

Item Value
RNA id TCONS_00018631
length 3292
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_009476
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41312032 ~ 41523292 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTGTTTCATAATGGACGACACACAAATATCCAGAGATGAAAATGTTTCTCCAGGATGCAGTTCTGTTCATCAGAAGAGATCAGAtccagagcccagctgtgtgtctatgaggaGTGACCAGTCTAGGGATCTTCCATATAATTTTAAGAGTGAAGATACACCGACTGATCTCAGTTTATTTCATCACAAGAGAACAGAAGCAGAGTCCAGCCGTGTGTCTATGAGGAGTGACACGTTTATGAATCATCCAGTAAATATGGGGAATGGAGAAGCACAGTGTAATATCAGGCAAAACCTgctaaacacatttagatcaaaTCTGCTGAAGAAGTTTGAGTGTCTGTATGAGGGAACAGCGGCGCAGGGAAACCCAACACTCCTGAATGAGATCTACACAGAGCTCTACATCACAGAGAGTGAGAGTGGAGAGATCAGTCATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGATCAACAACAGAGGACACAGCGATCAAATGCAGAGACATCTTTACACCTTTACCTGGACAAGACAAAGCCATCAGAACTGTGCTGACGAAGGGAGTCGCTGGCATCGGAAAAacagtctctgtgcagaagttcatcctGGACTGGGCTGAAGAGAAGGAGAATCAGGACGTCCAGCTCATATTTCCACTTCCTTTCAGAGAGATCAATCTGATGAAGGACAAAACACTCAGTCTGTCAGATCTTCTTCAGCTCTTTTTCCCTCAAACTAAAGAAATGGAAATATTCAGTGACAAATATAAAGTgctgttcatctttgatggtctggacgAGTGTCGTCTCCCCTTAAATTTTAAAAGGAATGAGACTCTGAGGGATGTGACCAAAACATCATCAGTGGACGTGCTGCTGACCAACCTGATTGTGGGgaatctgcttccctctgctctcatctggatcacctccagaccagcagcagcagatctcGTCCCCTCTGAGTGTGTCCATCGAGTGACAGAGGTACGAGGCTTCAATgaccctcagaaggaggaatacttCAGCAAGAGAATCAGAGATCAGAGTCTGGCCAATACAATCATCTCACACCTCAAGTCCTCCAGGAGCCTctacatcatgtgccacatcccagtgttCTGCTGGATCTCAGCCACTGTTCTGGAGAAGATGTTGAGTGAAGCAGAGACTGCAGAGATTCCCAAGACTCTCactcagatgtacacacacttcctGATCCTGCAGACCAACATCAAACATCAGAAGGACTATGAGGAGAAGCTGACAGATGAAGACATGATCCTCAAACTGGGGAAAGTGGCTTTTCAGCAGCTCATGAAAGGCAATATAATCTTCTATGAGGAAGACCTGAGAGAGTGTGGCATTGATGTGGCTGAAGCTTCAGTTTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGTTTGGCTTGTATCAGGGGAAAGTCTTCAGCTTTGTTCATCTGAGCATTCAGGAACATCTAGCAGCTCTATATGTGCACCTCTCCTGtataaacaacaatgtaaatgAGTTTGATCAAATCAACAAACAGAGTTTGTGGTTTAAAGTTAAAGACTTGTTTCAGCTCAATTCTTCAGAATGTGTTTCTTTATCTGAGCTGCATCAGCGAGCTGTAAATGAGGCTCTACAGAGtaaaaatggacatctggatCTTTTCCTGCGATTTCTTCTGGGTCTGTCAGTGGAGTCTCATCAGATTCTCCTACAAAGACTACTGACACTAAAAAGCAGATCAATCCAGAAAATTAAAACAGTCGAGTACATCAAGAAGAAGATCAGGAAAATTGACTCTCCAGAGAGATCCCTCAATCTGTttcactgtctgaatgaactgggTGATCATTCACTAGTGGAGGAAATACAGCAGTATCTGAAATCTGGAAGAATAAAGCAGTCCAAACTCTCTTCATCTCAGTGGTCAGctgtagtgtttgttttgttgacaTCAGAAAATAAACTGGATAAGTTTGATATTAATGAGTTTGTTGGAGAAAGCACCAAAGCTGAGAAACTGAAGATCCTTCAGAAGCTGCTGCCAGTGATCAAAGTTCATTTGAGGGATTGTGGTCTCACAGATGAAGATAGTGATGTTCTgacttcagctctgagatcaaaccctgTACACTTGGGATTTCTGAGTTTGTCGTATAAAAAACTAAAAGATTCAGGCATCAAGCTTCTCTCTGCTGTACTGGAGGATCCTCACTGTAAACTAAAGACACTGTGGTTGAGTTATTGTGGTCTCACAGAtgaaggttgtgctgctttggcttcagctctgagatcaaaccctgaACACCTGAGAGAACTGGATCTGTCTGGGAATAAACtaggagattcagtgactcttctCTCTGCTGTACTGGAGGATCCTCGCTGTAAACTGAAGACACTTTGGTTGAGATATTGTGGTCTCACAGATGAAGGTTTTGCTgctttggcttcagctctgagatcaaaccctgaACACCTGAGAGATCTGTATCTGTCTGTGAATAATCTAGGAGATTCAATGACTCTTCTCTCTGCTGTACTGGAGGATcctcactgtaaactggagaaactGGGGTTGATTGATTGTGGTCTCACAGAtgaaggttgtgctgctttggcttcagctctgagatcaaacctTGAACATCTGAGAGATCTGGATTTGTCTGGGAATAATCtaggagattcagtgactcttctCTCTGCTGTACTGGAGGATCCTCGCTGTAAACTGAAGACACTTTGGTTGAGTAATTGTGGTCTCACAGAtgaaggttgtgctgctttggATTCAGCTCTCAGATCAAACCGTGAACACCTGAGATATCTGAATGTGTCTGGGAATAAACtaggagattcagtgactcttctCTCTGCTGTACTGGAGGATCCTCACTATAAACTGAAGACACTGTGGTTGAGTAATTGTGGTCTCACAGAtgaaggttgtgctgctttggcttcagctctgagatcaaaccctgaACACCTGAGAGATCTGAATCTGTCTGAGAATAAACtaggagattcagtgactcttctctctgctgtactggaggatcctcactgtaaactggagagACTGGGGTTGAGTGATTGTGCTCTCACAGAtgaaggttgtgctgctttggcttcagctctgagattaAACCCTAAACACCTGAGAGATCTGAATCTGTCTAGGAATAAACTATCAAAATTTACAGTGAAGCTGTTCTCTGATTTGAAAGACGACCCACATAATAAACTGGAAACATTATACATTT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000141202

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018610 lncRNA downstream 252481 41238245 ~ 41246009 (-) True XLOC_009474
TCONS_00019234 lncRNA downstream 252669 41238245 ~ 41245821 (-) False XLOC_009474
TCONS_00019233 lncRNA downstream 426293 41068774 ~ 41072197 (-) True XLOC_009472
TCONS_00019232 lncRNA downstream 1137737 40358332 ~ 40360753 (-) False XLOC_009471
TCONS_00019235 lncRNA upstream 117216 41640441 ~ 41667355 (-) False XLOC_009483
TCONS_00018634 lncRNA upstream 119629 41642854 ~ 41667355 (-) True XLOC_009483
TCONS_00019236 lncRNA upstream 197826 41721051 ~ 41744848 (-) False XLOC_009486
TCONS_00018843 lncRNA upstream 530614 42053839 ~ 42058846 (-) True XLOC_009494
TCONS_00018655 lncRNA upstream 540958 42064183 ~ 42066345 (-) True XLOC_009495
TCONS_00018630 mRNA downstream 11697 41471175 ~ 41486793 (-) True XLOC_009481
TCONS_00018626 mRNA downstream 39877 41448287 ~ 41458613 (-) False XLOC_009476
TCONS_00018629 mRNA downstream 40592 41455261 ~ 41457898 (-) False XLOC_009476
TCONS_00018625 mRNA downstream 47667 41448242 ~ 41450823 (-) False XLOC_009476
TCONS_00018624 mRNA downstream 59669 41422248 ~ 41438821 (-) True XLOC_009480
TCONS_00018635 mRNA upstream 147517 41670742 ~ 41689981 (-) False XLOC_009484
TCONS_00018636 mRNA upstream 147528 41670753 ~ 41677689 (-) False XLOC_009484
TCONS_00018637 mRNA upstream 154168 41677393 ~ 41689684 (-) True XLOC_009484
TCONS_00018638 mRNA upstream 170410 41693635 ~ 41708657 (-) False XLOC_009485
TCONS_00018639 mRNA upstream 174533 41697758 ~ 41700406 (-) True XLOC_009485
TCONS_00018622 other downstream 102417 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018590 other downstream 1429363 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 3769324 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 4624124 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 4965243 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018633 other upstream 6035 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 754448 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 1005565 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 1205245 42728470 ~ 42728586 (-) True XLOC_009507
TCONS_00018678 other upstream 2128421 43651646 ~ 43651761 (-) True XLOC_009518

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000427_00019738_00058058.mRNA False 2585 mRNA 0.44 6 CI01000427 19738 ~ 58058 (-)