RNA id: CI01000192_00315657_00323729.mRNA


Basic Information

Item Value
RNA id CI01000192_00315657_00323729.mRNA
length 2759
RNA type mRNA
GC content 0.45
exon number 3
gene id CI01000192_00315657_00323729
representative True

Chromosome Information

Item Value
chromosome id CI01000192
NCBI id null
chromosome length 382550
location 315573 ~ 325189 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGTATAGTTGAATAAATCAATGAGTACATAAATGGACAGATATGATGATGAATCTGCACATCATCACTGGTTAAGAGAAACGCGTAGCCTATCACAAAAACAGAGGAGAAAAACAAAGCAACATATAGACTATACTGGCACAAAGAAACGGGCTTCTGACATACACATATATGAACACAGCTCTTCGATGACGCCATGCTCAGTCCGTGCGTGGCTGAGGGAACATGTGCTGGAACATGCTGTACCGCACGTGCCCTCCTCCCCCTCCCTTCACGTGTAATTCGCATGTTGCAGGAGAAAGACCACCGCACATCAACTCCCACGGTCCCACCCCACCGATCAACTCCGAAAAAAGCCGTGAGACGCTGTAATTGCATATGAGCAACATATATATTTTTTTTATCAGTTGATGTTTGATGAATTTCAATCTCACTCTCATCAATATCAAATTCAGCTCAATTATGCCACTTAATTTAGGCTACGCACCCCTGTGAAGAAATGGGATCCCCCTACTTTGCATATTACAGTATGAGGCTGGGAGTCGTTTAACCACATGAATACATAATGAATATACATTAATTGGATATACATTAATATATAATAACACAGATATGATAAATTAGTGGACAACGTCGCGCGAAAATGATGTCTTTTGTGTCCCAAATACGAATATAATGTAAAATAATTATGAATTAAAAATGACTTTTACCATGTAGGATTACAGGCATTGTTCTTAACACAGTCATAGGCTAGTAACTTTCTTTGTTTTCGTATTCTCTCTCTCTCTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAGAATTACATATTTTTTTCACCATATTTTAGTGGACACTAATTTTTCTTTCTTTCTTTTTATCATTTTCTTACATTTTGTAAGGTTTGTCAGTAAACACATACCCAATCTTGGGTATGATGGAATTATTAAATTCTTAAAGAATTGTACTTATTTTCAATATATAAAAACACCCTTAAATGTTTATTTATTTATTTTTAAATCTGTGTATTTAAATAAACACTGGGCGAATAAATCGCTTAAATATTGTTTTAACTAGAAAAATAATGAAATATTTTTGAAATATTTCGTAATTTTGTCACCCGTCTTTTGAATGAAATGGAACAGTCCGTTGAGGCCACGCCCCCTCTGCGCTCTCCTGTTGATGTTATTATTGTTTATGTCAGTCAGACGTTTGATGGAAGAAGTGACAAAAAACCCAAACAAACCTGTCGAGTTTCCCCAAAAATGACAACTGTCAGCCCGTAGCTTTCAGCTAGATAGGGACGTTATGAAAAATAGGATTATTGCCCCGAAACATATGTTAACAAAGGGGGTAATAAACTCATGGAGCTGCGCAACGGCACACAGGGGAGAATAACGAGCCTCCGGCGGGGCTGCAAGAGAGTCGAGCCGCCCAGCGCGAACATGAGGCGGGATGTCAGTAAAGTTCTGCGCCCGCTGCCCGTGGAGACCAACGATGACGATGAGCCCATGGAAGAAGAGGACTGTTTCTCCACGGGCTTCCTCAAGAATGCCAACCTCGAACCCGCGATGCTCTTCGCGGCTCCCAGGTATAGCTTGATTCGGGAGGTGGGTCGCGGGAGCTACGGTGTGGTGTACGAAGCCATCGCCCGCAGGTCCGGAGCCCGGGTAGCCGTGAAGAAGCTCCGCTGCGACGCGCCCGAGAAAGTGGAACTGGCGCTGGCGGAGTTCTGGGCCCTGGCGAGCCTGGAGAAGAAGCACGAGAATGTGGTGCAGCTGGAGGAGTGTGTGCTGCAAAGAAACGGGATGGCACAGAAAATGAGCCACGGGAACAAACGAAACAAGCAGTATTTGAGATTAGTGGAAACTTCACTGAAAGGTGAGCGTATCCTGGGTTACCCAGAGGAACCGTGTTATCTTTGGTTTGTTATGGAGTTCTGCGACGGCGGCGACCTCAACCAGTACATCCTCTCCCGACGACCTGATCCACGGACCAACCATAGTTTCATGAAGCAGTTGACCAGCGCTGTGGCCTTCCTCCATAAAAACAACATTGTCCACCGGGACCTCAAACCAGACAACATTCTCATCTCACAGAAATCGGACGGTCCCGTGATCAAGGTTGCTGACTTCGGCCTCAGCAAGGTGTGCGCGGGACTCAGCTGCATTGAGAACAAAGGCGACAACCAGGTTAACAAGAACATGGTGAACGTTAACAAATTCTGGCTGTCGTCAGCATGCGGCTCCGACTTCTACATGGCGCCGGAGGTGTGGGAGGGCCATTACACTGCCAAGGCGGACATTTTTGCGCTCGGCATCATCATTTGGGCCATGCTAGAACGGATCACATTTATCGACGCTGAATCCAAGCGAGAGCTCCTCGGCACGTACGTGCGACAGGGAACTGAGATCGTCCCGGTCGGCGAGGCCTTGCTGGAGAACCCGAAGATGGTCCTGCACATCCCTCAGAGGACACGCAGCATCATGTCAGAGGGCATCAAGCGGCTTCTGCAGGACATGTTGGCGGTCAACCCGCAGGACCGGCCTGACGCATTTCAGTTGGAAGCCTGTATGAGTCTCCATTGCTACTGCGTATACACTGTCAGGTTCATTATTCACACCGGAGGAACACATATTCGCTCAATCGTTAAGATTTGAAATATACCAGTGATGATATTGCTTCTCGTTTTTAATTAAAAATTAAAACACTTTCAGTAATTCACACCACAAGAATGTAATAAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K08859 STK35, PDIK1, CLIK1; serine/threonine kinase 35

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439488 lncRNA downstream 1130 312318 ~ 314443 (-) True G384286
TU439477 lncRNA downstream 27791 286252 ~ 287782 (-) True G384279
TU439487 lncRNA downstream 93813 121263 ~ 221760 (-) True G384285
TU439485 lncRNA downstream 120118 119718 ~ 195455 (-) True G384283
TU439440 lncRNA downstream 244107 42296 ~ 71466 (-) True G384247
TU439533 lncRNA upstream 286 325475 ~ 325699 (-) True G384329
TU439535 lncRNA upstream 1458 326647 ~ 326991 (-) True G384331
CI01000192_00252038_00254509.mRNA mRNA downstream 61064 250552 ~ 254509 (-) True CI01000192_00252038_00254509
CI01000192_00169090_00206672.mRNA mRNA downstream 108901 168969 ~ 206672 (-) True CI01000192_00169090_00206672
CI01000192_00124135_00167418.mRNA mRNA downstream 147744 123577 ~ 167829 (-) True CI01000192_00124135_00167418
CI01000192_00116033_00116872.mRNA mRNA downstream 198701 115839 ~ 116872 (-) True CI01000192_00116033_00116872
CI01000192_00345708_00354498.mRNA mRNA upstream 20074 345263 ~ 356428 (-) False CI01000192_00345708_00354498
TU439471 other upstream 30940 356578 ~ 357426 (-) True G384276

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044544 False 1935 mRNA 0.48 3 NC_007134.7 41739721 ~ 41762956 (-)