RNA id: TU439485


Basic Information

Item Value
RNA id TU439485
length 979
lncRNA type read_through
GC content 0.33
exon number 2
gene id G384283
representative True

Chromosome Information

Item Value
chromosome id CI01000192
NCBI id null
chromosome length 382550
location 119718 ~ 195455 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACCGTCATAACTTTGCAGATGTTGTTTATGCTCAAACAGCAACATTACACACTAACTAAAGTTAAAAAAGTGAAATCATAATCAACCACCCCTTTAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAAGTTAATCAGTATACAAACACACAAGGATGTCCCACCCCATTTTTTTTTTTTTTTTTTTTGAGTGCAGAAAGTCTAACCCTAAAGACTAGATCCTAAAATCCAGAACTGAAAAGAACTGAATGTGTGTGGGTGATTTTTTGAAGCATTTATTGACATTTTAGGTATTTTGTACATTTGTCATCTATAACGAGGGTCACTAATATAATTGTCTAAATGTATAAATATGATACAATAGAAACAAAAAGAGAAAAAAACAACAACTTGGGTTAACCCAAGAAGAAGTGAACTGTCAATATTGCCCCACTTGTAGAAACCAGTTCAAGTCACCGTCTACTAAACATGTTGCAGCACTGCAGGTTGGATGTCTCCGTGAAATAAAAAGGATGGGTTATATGTGAAATAGCCATGATTGCCAAGAATGAAAAGTTTGTGGCAAAGCAGTCAATGTTTTGTTGAATGTTCACTAAAAGAAATGCAGAGTATTTGCTACTCTAACTAGTCAGTGTCATTGGCGGTCTGTGACTGCTGCTTTATTTTTTATAATTTCCCCTTGTCTTTGCTCTACCAAACCCATTTCAAACATCGATAAATGTAAATGATCAATCCATGTTTCTGTTCAATTTTTTTTTTGGTCTGTGTTTTTCTATTGTCTTTTGTCTTTTCCCCATTTTTCTTTTTCAAAATGTCTTTTTCTCTCTCTAAAAAAAAAAAAAATGAAATGACTTTGCCACAATGATTCATGGAATGGGAAATGGTATTTGCACTTGAAATTTGTTTATGCTCATGTAAAAATGTCTGGATTTTGTATTGTCTTTTTAAATGAAAGAAATTGGTGTTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439440 lncRNA downstream 48252 42296 ~ 71466 (-) True G384247
TU439477 lncRNA upstream 90797 286252 ~ 287782 (-) True G384279
TU439488 lncRNA upstream 116863 312318 ~ 314443 (-) True G384286
TU439533 lncRNA upstream 130020 325475 ~ 325699 (-) True G384329
TU439535 lncRNA upstream 131192 326647 ~ 326991 (-) True G384331
CI01000192_00116033_00116872.mRNA mRNA downstream 2846 115839 ~ 116872 (-) True CI01000192_00116033_00116872
CI01000192_00252038_00254509.mRNA mRNA upstream 55097 250552 ~ 254509 (-) True CI01000192_00252038_00254509
CI01000192_00315657_00323729.mRNA mRNA upstream 120118 315573 ~ 325189 (-) True CI01000192_00315657_00323729
CI01000192_00345708_00354498.mRNA mRNA upstream 149808 345263 ~ 356428 (-) False CI01000192_00345708_00354498
TU439471 other upstream 160674 356578 ~ 357426 (-) True G384276

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045121 True 1424 lncRNA 0.33 2 NC_007134.7 41303512 ~ 41305045 (-)
eurasian perch (Perca fluviatilis) TU66442 True 1078 lncRNA 0.37 1 NC_053116.1 14402710 ~ 14403787 (-)