RNA id: TU439488


Basic Information

Item Value
RNA id TU439488
length 1490
lncRNA type inter_gene
GC content 0.34
exon number 4
gene id G384286
representative True

Chromosome Information

Item Value
chromosome id CI01000192
NCBI id null
chromosome length 382550
location 312318 ~ 314443 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGTTTGATTAAACATTTTAATCAATTAAATAATCACTTCTGATTGATATGATTAATCAAAATGAGTTGTCTATATATCAGTATTTGTTGAGAAAGGCCTAAAATGAAGATAATTCAAATACATTACATTATTGTGCCAATATTATGGTAAATTTGTAAAATAAAGTCAGTAAAGTATTTTATTAACTTGAAATTCACATTTGAAAGTCTTCTGCCTCATGCCAGTTTGAAAGTTGTATTTGTTACTTTTTATAAATAATACAATTACTCCTATACTATTTTGAGTAGTGCACAACTATTTCTGTGCTCAAATCATTCGCAGACGCAAAGCCACCTCGAACCGCTCGTCTTTTGCATAGACTGAACTGCGTTCGTCTAAATGTGGCCATGTTGTATATGTGATTATAGTCATTATATAAGTGGGTCAATGAGTGCAGAGCAGCTAATGTATAGTACAGTGTGTTCTCTATGGCCTGTGGGTATGTCTCTGTTCACGGAGGGCCATGTCCTGTTGATCAACACTACAGCTTCTGTGTTGACATACAGGCACATAGGTGAGCAGAAAATTAGTGTTTCTGTGAAAGTTCGAAAGTTGTCCCGTTAGTTTTGATCTGAACAAAATGCAGAAATGCATTAGAAAGCAACAATGTCAATCAGATTTCACAACTTTTGCAAGTTAACAGAGCATTTGTCTCTTAAGATTGCAAAACTACCATTTTTGTGTGAGGTTCAGACTCCTTTGGGAAAGGTGGGGGTGGTTTAGAGGTGTTTTCCAGGATTGTTGGGGAGGTAATGACGGAGCGAGTGTTTACAGACTGTTATGTAAGCTGGAATAACATTCAGCTGATAATTGTGCTAAAAATATGCTGTTTTTCCATGTATTTAGCACACTTTTTCAATCAGAGGTTGCTTTTTTCTATTGTTAAACTGTTTTGGTAAGTTGAGATGAAAAATCTTCCTTGAACTAAAGAAGAACTGCCCAAAACGCTTTGCAAACTAATAATAAGTTAATGTAAGATGTGACACTGAAGTCGTTTGTGCACTGTAAAAAAGTATTTTTCGAAGTAGTAATTCAAACAAATATTATTGGACTACATTTTACAAGAAGATACTATTTCAGTGTTTCTACTTTTAAAATTTAAATGTTTCTTTGTAATTATTTGTGAAATTTACTAGTGATTTCTAAGTGAAAAATTGTTTCAAAGTAAATCCTACACCAATTTTTTTTCTCAGCGTGTCTCATTGTAACCCTATAGAAGCTTGTTTCTGCCACTGAATAAAAAATAAAAAAGGTAATTGCGACTTGTCTCAATATTCTGACTTTATAACTCGCAATTGTGAGTTTATGTCCCGCAATTGCAAGTTTATATCCCGCAATTGAGTTTATATCCCGCAATTGTGAGTTTATATGCCGCAATTCTGACTTTCTTGCAATTGTGAGCTTATATCCCGCAATTGCGAGTTTATATCCCGCAATTCTGACCTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439477 lncRNA downstream 24536 286252 ~ 287782 (-) True G384279
TU439487 lncRNA downstream 90558 121263 ~ 221760 (-) True G384285
TU439485 lncRNA downstream 116863 119718 ~ 195455 (-) True G384283
TU439440 lncRNA downstream 240852 42296 ~ 71466 (-) True G384247
TU439533 lncRNA upstream 11032 325475 ~ 325699 (-) True G384329
TU439535 lncRNA upstream 12204 326647 ~ 326991 (-) True G384331
CI01000192_00252038_00254509.mRNA mRNA downstream 57809 250552 ~ 254509 (-) True CI01000192_00252038_00254509
CI01000192_00169090_00206672.mRNA mRNA downstream 105646 168969 ~ 206672 (-) True CI01000192_00169090_00206672
CI01000192_00124135_00167418.mRNA mRNA downstream 144489 123577 ~ 167829 (-) True CI01000192_00124135_00167418
CI01000192_00116033_00116872.mRNA mRNA downstream 195446 115839 ~ 116872 (-) True CI01000192_00116033_00116872
CI01000192_00315657_00323729.mRNA mRNA upstream 1130 315573 ~ 325189 (-) True CI01000192_00315657_00323729
CI01000192_00345708_00354498.mRNA mRNA upstream 30820 345263 ~ 356428 (-) False CI01000192_00345708_00354498
TU439471 other upstream 41686 356578 ~ 357426 (-) True G384276

Expression Profile