RNA id: CI01000201_00124616_00139299.mRNA


Basic Information

Item Value
RNA id CI01000201_00124616_00139299.mRNA
length 2066
RNA type mRNA
GC content 0.53
exon number 10
gene id CI01000201_00124616_00139299
representative True

Chromosome Information

Item Value
chromosome id CI01000201
NCBI id null
chromosome length 704500
location 124616 ~ 139527 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTCTGCACACCTGATTTTGACAAGTCAAAGTTCTTCCGGGTATTATCAGTCTGAACATGTCAATCATCTCACCTGCACTTTAGAGGAGCTTCATCTACAGATGCTGATGGAAAACAGGAGCTTGAGGTTTCTTGCTGGTTTTCTGGTTCTTTTCCAGTCCAGCTTGTGTGTCACAAATGCAGATCATGATTCCAGACCCAACTTCGTCCTGATGATGGTGGATGATCTGGGCATTGGAGATATCGGCTGCTATGGAAATGACACCATCAGGACTCCAAACATAGATCGTCTGGCCGCGGATGGAGTGAAACTGACCCAGCACATCTCCGCTGCTCCTCTCTGCACTCCCAGCAGAACCGCCTTCATGACGGGCCGCTACGCTCTACGTGCCGGTCTGGGCAGCACCGGCCGAGTGCAGGTGATTCTTTTCCTTGCTGGATCAGGAGGACTTCCACCTAATGAAACCACCTTCGCTAAACTTCTGCAAAAGCAGGGTTACACCACCGGCATTGTGGGTAAGTGGCATTTGGGTGTGAACTGTGAGAGCAGGAATGATCACTGCCACCATCCCAACAATCACGGCTTTGATTTCTTTTACGGGCTGCCCTTCACCTTCTTCAATGACTGCAAGCCTGGAGAAGGTAAAGATGTCCTGGTGGACCTGCAGGAGAAGCTGTGGCAGATTTCTGCACTGGTGGCACTTGCGTTTCTCACGCTGCTTCTGGTCCGGGTCGTCGGGCTGCTGCAGGTCCGTCTGACACTTGTGGCATTTCTGGCTGTTCTGTCGCTGCTGAGCTTTTCTGTGTGGTTCATACCCTTTGAACTCCTGAGGACTTGGAACTGCATCATCATGAGGAACAGAGAGGTGGTGGAGCAGCCCATGAACCCGGAGACGCTGAACGCACGGCTCATGCATGAAGCGGAGCAGTTTGTGGAGAGACACAGAGACGGGCCCTTCCTGCTGTTCCTGTCACTGGCACACGTGCACACGCCTCTCTTTGTGTCTGAGGGCTTCGCCGGAAAGAGCAAACATGGGCTGTATGGGGACAACGTTGAAGAAGCGGACTGGATGATTGGTAGAATGATGAAGACCATCAAAAGGTTCGGCCTGTCGGAGAAAACCTTGATGTACTTCACATCTGACCACGGCGGCCACATCGAAGACGCTCAGAGAGGAGGCTGGAACGGGATATATCGAGGTGGTAAAGCCATGGGCGGCTGGGAGGGAGGAATCCGAGTGCCGGGAATATTCCACTGGCCCGGGCGTCTCACTGCAGGTCGACAGGTATCAGAACCAACAAGTCTGATGGATGTTTTTCCCACAGTGGTGAAGCTCGCCGGGGGAGCGCTACCGGAGGACAGGATCCTGGACGGTCGTGACCTGATGCCACTGTTAGAGGGCAAAACCAACCGCTCGGAGCACGAGTTCATGTTCCATTACTGCGGCATGTATCTGAACGCTGTGCGCTGGCATCCGCACGACAGTGAATTCATCTTCAAGGTCCATTTCTTCACACCGAACTTTTCTCCCGCGGGAGCCGTCGGCTGTTACGACACCAAGGTGTGCATGTGTCACGGGGACTTTGTGACGTACCACAACCCGCCGCTGGTGTTCGATCTCAGCAGGGACCCGTCAGAGAGTCGTCCGCTCTCACCGGAGACGGAGCCGCGCTTCGCAGAGGTGCTGGAGCGTGTGGGACGGGCCGTGAAGGACCACCGCAAAACTCTGATGCCTGTGGAGAAACAGCTGACGTGGACAAACGTCCTGTGGAAGCCGTGGCTGCAGCCCTGCTGCGGGACCTTCCCCTTCTGCTCCTGCTCAGAAACAAACACTTAAGAAACCAGAGAGTGAAGGATGAACGAGTGCTGATGATATCAGTGCTTCAGAAGAAGGGAATCGTATAGAAGGAGCTCCTGTGTTGATTTAACATGAAGAGCATCGATCCTGCTGTGCAGAACATTGTCGTGTCTTCATCATGTCTGAAAGTAAATATTTTAACTTTTTAAATACTTGTCCTGACATTTTTTACATTAAATATTAAACATTTTCCGCTGACACTTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443637 lncRNA upstream 20567 47560 ~ 104049 (+) True G387629
TU443623 lncRNA downstream 4557 144084 ~ 144791 (+) True G387615
TU443663 lncRNA downstream 15313 154840 ~ 155726 (+) True G387650
TU443767 lncRNA downstream 95364 234891 ~ 268792 (+) False G387739
TU443772 lncRNA downstream 95364 234891 ~ 268792 (+) False G387739
TU443774 lncRNA downstream 95364 234891 ~ 268792 (+) True G387739
CI01000201_00098073_00121392.mRNA mRNA upstream 2822 98017 ~ 121794 (+) True CI01000201_00098073_00121392
CI01000201_00066137_00066334.mRNA mRNA upstream 58169 63803 ~ 66447 (+) True CI01000201_00066137_00066334
CI01000201_00043840_00048171.mRNA mRNA upstream 76036 43780 ~ 48580 (+) True CI01000201_00043840_00048171
CI01000201_00254354_00285896.mRNA mRNA downstream 114588 254115 ~ 286062 (+) True CI01000201_00254354_00285896
CI01000201_00394321_00396791.mRNA mRNA downstream 254625 394152 ~ 396995 (+) True CI01000201_00394321_00396791
CI01000201_00421647_00426906.mRNA mRNA downstream 281059 420586 ~ 426906 (+) True CI01000201_00421647_00426906
CI01000201_00473896_00474283.mRNA mRNA downstream 334369 473896 ~ 474436 (+) True CI01000201_00473896_00474283
CI01000201_00547876_00556142.mRNA mRNA downstream 408349 547876 ~ 556255 (+) True CI01000201_00547876_00556142

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074849 False 1179 mRNA 0.60 6 NC_007120.7 55576475 ~ 55586151 (-)