RNA id: TU443774


Basic Information

Item Value
RNA id TU443774
length 3305
lncRNA type read_through
GC content 0.37
exon number 3
gene id G387739
representative True

Chromosome Information

Item Value
chromosome id CI01000201
NCBI id null
chromosome length 704500
location 234891 ~ 268792 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATAATCTGCTGTGAAAAGAGCCCAACTTCAGGTTTATAATGAATTACAAGCATTTAAGTTCAGATCTGCGACAGACAGTTAACAGGTTAATGATTTATCCAGTATTTTAAGAACATTTAACTCTTTAACCCGCCATTGACAATCCATGTTTTCACTGTTAAACGGTAGGGGGCGCTATTACACATCTTCTGAAAGAGTACAGAATCTCCAGATCAAAACACAGGTGAAGAAGAATTAGAAACAAGAGATAGAAGCATTGCTGACGCACATAAATGACACGATCATCAAACATCAAAAATGCCTTACGTTACCAAATTAAATGTTGAACCATGAAGAGGAAATGACTGTGAAGTTTTGGAGCTCTTGATGGACTCGATCTATTCCCCTAAATCAACACTCCCATCCAGCTGGGATGTTCTAGTACTGGCAACTGCTTTTAAAAATTGCTGGCAAGGAAAGGGTTAAATGCATTGACTAGGAAGCCTGAATCTTGCTATCACATGAACCCTCCATATACATCCACCCTGTATGTTTTCATGCTCCAATTGCAAAACCTCAGATGTATTTGTGTTTCTGTGGTCCGTGAGTGACCACAGATGGTTGCAGTGCCACAAACTGAGCGAGAGCATGCAGTTACTGCTCCTGTCACTGGAGAAGCTGCAGCTCCACCATCTGTCATCAGGAGCCGTCTCAGGCAATGTGACGAAGACCAAGGTTTACCTGCACAAACACATTTGCTTTGTGTTCAACGCGTCATGTAATCTCCACATGAAACGTGTCGGAGCATCACATCAGTGATTTTACAATGTAGCAAGACAGAAGTGTGAAGGTAAACAGTGTAAACATGCATAAACAGAAAGAAATGGAAGCAAAAACTGCTATTTATACACTAGAGCTGCATTAACTAAAATATCCCATATATATACAAACATGAAAAGTGAGTGAGCAAATGAGTAAAATCTAAGTTTATTTAAGTTTAGAAAAAGCAGCAAAAAGTCTCTTACATATACAGTATCCATCATGTTTCATACAGCGTAAAGTATGGAAAGATTTAAAGAAGCAACATGATTGAAACATGTACATGTCCATCAGTACCCTGTTAGGCAGATTAATATTGACCAATAATAATTACGGATCCTCTGGTGAAGCTTCGCTGGAGCTTGTGTGTCACTTTGTTGCAGGGAAAGTAAAAATCATTAATTAATAATGTTCAAAACAGCTGAACAACGAAAAGAAAAAAAAAGTTTTATAAATCATAACGGAAGATAATTACAGGAACTGACAGTATGCAAACTTCCTGTTTACAAATTACAATCACTGGAAGCTGGACACTGAAATTTAGAACGATTTGCGAAAACATTTAAATCTGTTCTCACCGCAGCTCGTCTTTCTGGAAAACAACAAAATCACTTTAAAGTTGAAGCGTGTCATTTCTAAATGGCATGACATCATCAACCAATGACATGACATTTGGGGGCGGGGCTATCTGTTTGACTGACCAATGGCAGATGGGGAGTGTGTTCAGGAAAGCACTCATTACTTTTGCTATTCCATTTGATGCAGTTTCAAGCAGAAGGACATGAGTATATGGATCTATGGAACTATTTGTTTAATCCACTGTCACATAAATAATGTTTCGTAATGTTCAAACACAGAGGGATGAAGATGGCAAACGTACATTCAGAACTGTACACGAGCCAATGAGAAAATGTAATTGAAAGCAATACTACAAGCTGCAGATGTTCTTTTTACAATTTATTCTATATGCTATATACACTATGCACTAAAATAACACTATTCAGGCTGAGAAGGAGAATACATCAGATGATGTCTGATACGAGCTCTTAAAGGTGCTGTAAGCAATAGTTTAAATGGAATAATACATATACAATCTCTCTACAGCCTGACAGATATCAAAGAAACACGTGCTGTAAGAAATAAGAAGAAAAGAGTTTTAGCCAATCAGAAACGCTCTCCACCTGTCAATCATTGTGTGTGTTCTGTTGAAAGCACTTCCAGCACCTTTAAGATCTGACTGAAGATCCTCTCAGAGTTTCACACTGCAACCTGATCTCATGTTTAAAATGTAAGATGTGACTCTTGTGGATCCTCAAACAAGATTTTTCTCGAAATTACAAAGTATTCAAGCACTTTTTGAGTCACACTTAGAAAAACACTGGGAATGTGGTTAATTAAAGTTTCATTTGGCACAGAGACAAAATATTTTCAGAAATCCTCTTAAATGAGCCACAGTGATCAATGATCCCATAAACCACTGCTGCACATGACAGACAGAACTCACTCTAGAACAACAGAGGGAAATTCAAAGATTGACACTAGATAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATAGACTGATGATAGATAGATAGATAGAGAGATAGATAGATAGATAGATAGATAGATAGATAAGATTGAACGAACTAATGATAGATAGATAGAATGAACGATAGATAGATAGATAGATTAGAATGAACGATAGATAGAATGAACGATAGATAGATAGATAGATAAGATTGAACGAACAAATAGATAAGATTGAACAAATGATAGATAGATAGATAGATAGATAGAACGGACAAATGATAGATAGATAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACTGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAGATTGAACGGACAAATGATAGATAGATAGATAGATAGATAGATAGATATGATCGAACGAACAATTGATAGATAGATAGATAGATAAGATTGAACGAATAAATGATAGATAGATAGATAGATAGATAGATAGATGACATAGCAACCATCCAGAACACACTAGCAACCTCCCAGAATACTCTAACATCTGCATAGTAACACCCTAGCAACCACACAGTAACAAATGCCTTAGCAACTTGCATAGCAACATTCTAGCAACCACCCAGAATGCCCTAGCAACACCCTTGCAATGCCATAACAATACTCTAGCAACCACCCAGAATACCCTAGCGACTGCCTAGCAACACCATAGGAACAGCCTAGAAACTGCATAGCAACATTCTAGCAACCACCCAGTACACCCTAGTAACTGCCTATGAAAGCACTAGCAATGCCCTAGCAATTGCATAGCAACACTCCAACAACCACCCATAACACCCTTGCAACTGCCTGGCAACACCCTAGCAACTGCTTAGCAACACTCTAGCAACCATCCATAATACCCTAGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443663 lncRNA upstream 79165 154840 ~ 155726 (+) True G387650
TU443623 lncRNA upstream 90100 144084 ~ 144791 (+) True G387615
TU443637 lncRNA upstream 130842 47560 ~ 104049 (+) True G387629
TU443861 lncRNA downstream 54030 322822 ~ 354650 (+) True G387804
TU443865 lncRNA downstream 71395 340187 ~ 385102 (+) True G387807
TU443907 lncRNA downstream 137421 406213 ~ 406445 (+) True G387838
TU443923 lncRNA downstream 220613 489405 ~ 489702 (+) True G387848
TU443924 lncRNA downstream 229994 498786 ~ 527371 (+) True G387849
CI01000201_00124616_00139299.mRNA mRNA upstream 95364 124616 ~ 139527 (+) True CI01000201_00124616_00139299
CI01000201_00098073_00121392.mRNA mRNA upstream 113097 98017 ~ 121794 (+) True CI01000201_00098073_00121392
CI01000201_00066137_00066334.mRNA mRNA upstream 168444 63803 ~ 66447 (+) True CI01000201_00066137_00066334
CI01000201_00043840_00048171.mRNA mRNA upstream 186311 43780 ~ 48580 (+) True CI01000201_00043840_00048171
CI01000201_00394321_00396791.mRNA mRNA downstream 125360 394152 ~ 396995 (+) True CI01000201_00394321_00396791
CI01000201_00421647_00426906.mRNA mRNA downstream 151794 420586 ~ 426906 (+) True CI01000201_00421647_00426906
CI01000201_00473896_00474283.mRNA mRNA downstream 205104 473896 ~ 474436 (+) True CI01000201_00473896_00474283
CI01000201_00547876_00556142.mRNA mRNA downstream 279084 547876 ~ 556255 (+) True CI01000201_00547876_00556142
CI01000201_00572895_00575129.mRNA mRNA downstream 303927 572719 ~ 575704 (+) True CI01000201_00572895_00575129

Expression Profile