RNA id: CI01000218_00119041_00133536.mRNA


Basic Information

Item Value
RNA id CI01000218_00119041_00133536.mRNA
length 2847
RNA type mRNA
GC content 0.54
exon number 20
gene id CI01000218_00119041_00133536
representative True

Chromosome Information

Item Value
chromosome id CI01000218
NCBI id null
chromosome length 266553
location 119041 ~ 133536 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTCTGAAGGCACTTCAGGACATGAGCTCATCTACTCCGGCCATCTCACCGCTGCTGTCCATCAGACACAAAGCTATTCCTGTGCAAACCTTCGAGGTGAAACTGGACGTGTATCTGGCTGACCTGACGAAGATCGGGAAGAGTCAGAAGTACTCGCTGAGTGTGGATGTGGAGGGAGGAAAACTGGTGGTGATGAAGAAAATGAAGGATGCGCAGGAGGACTGGAACACGTTCACTCACGACAAGATTCGGCAGCTGATTAAGTCTCAGCGTGTTCAGAATAAACTCGGAATCGTCTTTGAGAAGGAAAAAGACAAAAGCCAGAGGAAAGATTTCATCTTCGCCAGCGCAAAAAAAAGGGAAGCATTCTGCCAACTGCTGCAACTCATGAAGAACAAGCATTCCAATCAGGATGAGCCGGATATGATCTCCATCTTCATCGGAACATGGAACATGGGCAGCGTTCCTGCTCCTAAATCGATGGGATCGTGGATTTTATCTCGAGGCTTGGGGAAAACTCTGGATGAAATGGCGGTCACAATCCCTAATGACATCTATGTGTTCGGTGCGCAGGAGAACTCTGTGTGTGACAAGGAATGGGTGGAAACGCTCCGCTCCGCCCTCAAAGAATACACAGAGATCGACTATAAACCGATTGCAGTGCAGACGCTGTGGAACATTAAGATCGTGGTCTTAGTGAAGGCGGAACACGAGAACCGCATCAGTCACGTGGGAATGTCCAGCGTCAAAACGGGAATCGCCAATACACTCGGAAACAAAGGAGCAGTGGGCGTGTCCTTCATGTTTAATGGAACATCGTTTGGTTTCGTTAACTGTCATCTGACGTCCGGCAATGAAAAAATCCACAGACGCAACCAGAATTACCTGGACATCCTGCGTCAGCTGTCGTTGGGTGATAAACAGCTGAACTCCTTCGACATCTCGCTGAGATTCACGCATCTGTTCTGGTTCGGCGATCTCAACTACCGTCTGGACATGGACATTCAGGAAATCCTCAACTACATCAACAGGAAGGAATTTGAGCCATTGTTGAAGGTGGACCAGCTAAATCTGGAGAGGGAGAAGAACAAGGTCTTCCTTCGGTTCGCGGAGGAGGAGATCACCTACCCGCCCACGTACCGCTATGAGCGCGGCTCCCGAGACACGTATGTCTGGCAGAAGCAGAAAGCCACAGGGATGCGGACCAACGTTCCTTCATGGTGCGACAGAATTCTCTGGAAATCGTATCCTGAGACACACATCGTTTGCAACTCTTACGGCTGTACGGATGACATCGTCACCAGCGATCACTCGCCCGTCTTCGGCACGTTTGAGGTGGGCGTGACCTCACAGTTTGTCTCCAAGAAAGGTCTGCCCAAGTCTTCAGAACAGGCGTATATTGAGTTTGAGAACATCGAAGCCATCGTGAAGACGGCCAGCAGAACCAAATTCTTCATCGAGTTTTATTCGACGTGTCTGGAGGAGTTTAAGAAGAGTTATGAAAATGACACTCAGAGCAGTGATAACGTGAACTTCCTGCGTGTGGGCTGGTCCTCCAAACAATTGACGACACTCAAACCTATCTTATCCGACATCGAGTATCTACAGGACCAACATCTTCTGCTGACGGTCAAATCTCTGGACGGATACGAATCATACGAGTGGATCAGTGTTGACAAGGACGAGACGGGCGGACCCAAAGGCAGAACTCTTCCTCCGAGAGCCGGACACGATTACGTCAAACCGTCCACCAGCAGGAAGTTGGGGTCAGCTGACCTCGGCAAACAGGATCCGTTTGATGGTGACGCCACAACATGCAAAAACAGCTTCAATAACCCCGCCTACTACATTCTAGAAGGCGTTCCCAACCAATCCGCTCTGGCCTCTGACCTCCTCCCAGGCTCCGCCCTCCCTCCACTAGCCAATAAAACAGCTGCTCCTGTGGGAGGCGTGGGGAAAAACAAGCCGCCCAGTGGGAGTTCGGCGCAGGGCCGCTGGCAGACGGGTGGACGCCCGGTTCGCCCCATCAGCGAGGAGGGGTCTTCGGAGGATGACGGGAACATTGGGCCTCACGTCGGGTCGCTGAATCGCCCTCCGCCTGATTTCCCTCCTCCGCCGCTGCCCAAAGGAGCTCTGGAGATGGCGGAGAACTCGTTCGGGAAACCGCGGATGTTTCCGGACCTCGCTGACGTCAAGATACCACCTCCGTCTGCTGTTCCGTCCAAACCGCTGTCGTCTCCCAGCTTTGTATCGCCCCCTGGAGGAGGCGTGGCCTTCTGCCTGGAGACTCCGCCCATGCTAAACCCAACCCCCGCACCTTTCCGTCGAGGAGGCGGAGCCTCTGGACTGGACGACCAGTCGTGTTCGGTGCTGCAGATGGCCAAAACGCTGAGCGAGGTGGAGTATCCGTCAGGGAGAGAGCGAGGCGGGGTTGTGAAGGGGCCGGCGGCTCCTCACATGAGAGGCCTGACCTTCCCGCCGCGCTCCATACAGGAGGAGAGCATCGCTGAAGACCTGCCTGAGGAGGGCATGTGGCATGACGAGAGCAGCAGCAGCAGCCTGTCGGTGGAGGTCAGTGTGGGCGAGTGGCTGCAGAAGCTCGGTCTGCAGCATTATGAGGAAGGACTGCTGCACAACGGCTGGGACGATCTGGAGTTCCTCAGTGACATCACAGAGGAGGATCTGGAGGAGGCGGGCGTTCATGACCCCGCCCACAAGAAGATCCTATTGACCAGCTTAAAACAGCAGCAGCAAAAGATGTTTCACTACAGCCCCGCCCTCCACTTCCCGTCGTCTGCATCCGGAGGAAGTGACATCACCAGAACATTCCTCACCTTTGAGCTGAAG

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K15909 SHIP2, INPPL1; phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU450137 lncRNA upstream 25967 159503 ~ 161366 (-) True G393102
TU450107 lncRNA upstream 32594 166130 ~ 166359 (-) True G393073
TU450111 lncRNA upstream 70367 203903 ~ 205595 (-) False G393077
TU450112 lncRNA upstream 70367 203903 ~ 205595 (-) True G393077
CI01000218_00064161_00064417.mRNA mRNA downstream 54568 64076 ~ 64473 (-) True CI01000218_00064161_00064417
CI01000218_00048845_00054766.mRNA mRNA downstream 64275 48382 ~ 54766 (-) True CI01000218_00048845_00054766
CI01000218_00002879_00017799.mRNA mRNA downstream 101242 2879 ~ 17799 (-) True CI01000218_00002879_00017799
CI01000218_00155323_00156947.mRNA mRNA upstream 21660 155196 ~ 156947 (-) True CI01000218_00155323_00156947
CI01000218_00167659_00171329.mRNA mRNA upstream 33558 167094 ~ 171329 (-) False CI01000218_00167659_00171329
CI01000218_00173197_00175957.mRNA mRNA upstream 39591 173127 ~ 176248 (-) True CI01000218_00173197_00175957
CI01000218_00185345_00187069.mRNA mRNA upstream 51251 184787 ~ 187489 (-) False CI01000218_00185345_00187069
CI01000218_00189439_00192976.mRNA mRNA upstream 54469 188005 ~ 193030 (-) False CI01000218_00189439_00192976
TU450094 other upstream 43640 177176 ~ 178218 (-) True G393070
TU450095 other upstream 43640 177176 ~ 178079 (-) False G393070
TU450096 other upstream 43640 177176 ~ 178077 (-) False G393070
TU450097 other upstream 43640 177176 ~ 178071 (-) False G393070
TU450098 other upstream 43640 177176 ~ 178073 (-) False G393070

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018723 False 3083 mRNA 0.55 21 NC_007126.7 47454441 ~ 47479119 (-)
bowfin (Amia calva) AMCG00016435 True 6928 mRNA 0.50 29 CM030122.1 19817121 ~ 19857504 (-)