RNA id: CI01000218_00167659_00171329.mRNA


Basic Information

Item Value
RNA id CI01000218_00167659_00171329.mRNA
length 2221
RNA type mRNA
GC content 0.53
exon number 4
gene id CI01000218_00167659_00171329
representative False

Chromosome Information

Item Value
chromosome id CI01000218
NCBI id null
chromosome length 266553
location 167094 ~ 171329 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACCATATTTGGGGTTTCCTGCCGCCATGCTGACTTGGGGGGTCAGCGCACTTTGTTGCTTCCCAGTCTGCATGAGACGTCACAGCGGGCCATGTTTGAGCTGGACATGCGGGAGCGAGACGACGGCACTGTGACCCTCAGTAACCTCTCGGCTCCGGCCGTCCGCACCTTCCTAGACTTTGCGTATTCTGGTGAAATAGAAATCAGAGAAGACAACGTGGACATGCTGTTTCACCTGGCTTCTTTCCTGCAGGTCAGCTTCCTGTCACGTGCTTGCAGCGACTTCCTGGTCCAAACCCTCGAGCTCTCCAACTGCCTGCACCTGTTGGCGGTTGCGGAGGGATACGGTTCCTCGCACCTGCTGCGTCGCGCCATCGAGTTCGTAACGCAGAACTTCCACAAGCTTTCCTCCACACTGGATTTCCTGGAGATGCCAGCGCGGGTTCTGGAGCGGTGCCTAGCGTCTGACACGCTCAATGTGCCGGATGAAGAGAGTGTCCTGCGCGCGCTCCTCCGCTGGACGCAGCACGACCTGCAGACGCGCGAGAGCCTGCTGCCGGAGCTCCTGCCTCAGGTCCGTCTGCACCATCTGCCTCCGGCTGCGCTGGAGGAGGCCGGACGCTCCGAGGACACTCTGACCACCGACGGACGCTGCGTTAGTATTGTTAGCGAAGCACTCGCGCGTGTTCGAAAATCCAGCGGGTTGTTTTCCGACGCTCGGCCTTCGACCACTTCCAGCTACATTTTCGTGTGCAAAACGGAGGAAAATGCAGAGATTCGTTACGCATTCTGCTATGACATCGGTGCTAACCGTTGGACGGAGTTGCCGCAGGACGCGGCGCGAATTTTAGACCTACCCGGATCAGCTATTATCGGCTTCGCCGAGAAGCTCTTCATTATTGGTGGATGCCGCGGGAACTGTCGTCGCGCCGTTCGCCTGCACATCGCCATGCCTGAGCACGACGCCACGGACGAAGTCTGGTGCTACTGTCCCGTCACATGCAACTTCACGCCAGCTCCGCACATGCGCCACCCGCGGACCATGCACGCCTGCGTCGCCGCTCTGCACCGCATCTACGCCATCGGTGGGAAATCCATCCTGGACGTGGAGTACTTTGATCCTCTGAGCAACATTTGGAAATCCGTCAGCCCGCTTCCCAAGAGGATCTACTTTCCTGAAGCGAGTGCGTGCGGAAGCGTCATCTACGCTCTCGGATCTGAGGTGGAAATCTCTGAAGCCTTCAATCCGTCGCTGGACTGCTTCTTCCGCTACGATGCAGTGGCGGATCAGTGGTGCCAACTAGTGGCAGAGTTTGGCCAGTTCTTCCACGCCACGCTCGTCAAGTCTGTGTCCGTCAATGACACGCTGTACCTCTGCGATCTCTCCACGTATAAAGTCTACAGCTTCTGCCCGGACACCTGCGTGTGGAAAGGCGAAGGCTCGTTCGAGTGCGCGGGCTTCAACGCGGGTGCTATCGGCGTGCGGGAGAAGATCTACATCCTGGGCGGCGATTATTCGCCCGACGAGATCACGGATGAGGTGCAGATCTTCCATCCGTCTGCAGAAACATCACCGTCTGGTCTCATGATCACAGCTGACTGGCCATCCTCCGATGATGATGATGAGCTCTTCATGAGTCCTGATATTGTTTGACCAGTAACCACATGAGCAGAACTGTGATGAATACAACCATAAAGTTCAGAAACAGTTCTTGTGCGGATCGGTCCATCTGAGCTGTTTAGAGATGCAACAGCTGGGGAACTGCTGAAGGTCCTGCATGAGAGAGAGAGAGAGAGGGGGAGAGAGAGAGAGAGATGTGGAAAAAAGATCACTATGTTGGTCATTATGAAATTAAGCCAGCCGTCCATCTGTCTATTCATCTATCCAAGTCACACCCACTTGTTGGCTTTGAATTTCAAACACAAATCTATCAGCAGTTCAACTGCTGTGACACACACACACACACACACACACATTTAATCTTGCGATCACATATCACACACTTCTGTTTTTGTATAAATGCAATTATAATGGTTATAGACAAGAAAACTTTTGTTTGTTTGTTTTTAAACGTTTGTGTTGCCGTTTGGTGTCAGTGAGATTTTTTTAATGTTTTTAAAAGAGTCTCTTCTGCTCACCAAGGCGGCATTTATTTGATCAAAAATACAGTAAAAATTATGAGATATTACAGCTTAAAATAGCTTAAATCATGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU450137 lncRNA downstream 5728 159503 ~ 161366 (-) True G393102
TU450111 lncRNA upstream 32574 203903 ~ 205595 (-) False G393077
TU450112 lncRNA upstream 32574 203903 ~ 205595 (-) True G393077
CI01000218_00155323_00156947.mRNA mRNA downstream 10147 155196 ~ 156947 (-) True CI01000218_00155323_00156947
CI01000218_00119041_00133536.mRNA mRNA downstream 33558 119041 ~ 133536 (-) True CI01000218_00119041_00133536
CI01000218_00064161_00064417.mRNA mRNA downstream 102621 64076 ~ 64473 (-) True CI01000218_00064161_00064417
CI01000218_00048845_00054766.mRNA mRNA downstream 112328 48382 ~ 54766 (-) True CI01000218_00048845_00054766
CI01000218_00002879_00017799.mRNA mRNA downstream 149295 2879 ~ 17799 (-) True CI01000218_00002879_00017799
CI01000218_00173197_00175957.mRNA mRNA upstream 1798 173127 ~ 176248 (-) True CI01000218_00173197_00175957
CI01000218_00185345_00187069.mRNA mRNA upstream 13458 184787 ~ 187489 (-) False CI01000218_00185345_00187069
CI01000218_00189439_00192976.mRNA mRNA upstream 16676 188005 ~ 193030 (-) False CI01000218_00189439_00192976
CI01000218_00198649_00204828.mRNA mRNA upstream 26905 198234 ~ 204828 (-) False CI01000218_00198649_00204828
CI01000218_00214048_00223824.mRNA mRNA upstream 42719 214048 ~ 223824 (-) True CI01000218_00214048_00223824
TU450094 other upstream 5847 177176 ~ 178218 (-) True G393070
TU450095 other upstream 5847 177176 ~ 178079 (-) False G393070
TU450096 other upstream 5847 177176 ~ 178077 (-) False G393070
TU450097 other upstream 5847 177176 ~ 178071 (-) False G393070
TU450098 other upstream 5847 177176 ~ 178073 (-) False G393070

Expression Profile