RNA id: TU450094


Basic Information

Item Value
RNA id TU450094
length 1043
RNA type TUCP
GC content 0.49
exon number 1
gene id G393070
representative True

Chromosome Information

Item Value
chromosome id CI01000218
NCBI id null
chromosome length 266553
location 177176 ~ 178218 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGGTGTATGATGGGAGACTATCAGCCATTTCACCTCAAACTCTCTTCAAGCAGCAAAATCCCTCGGCAGCGGAATAAAACCTCGATAAACACCCGACAGTTTCAGGTGATCGTGTGTCAGGATGGCCCGTACTAAGCAAACCGCCCGTAAGTCGACTGGAGGAAAAGCTCCTCGTAAGCAGCTGGCGACTAAAGCGGCCCGTAAGAGCGCTCCGTCGACCGGAGGAGTCAAGAAGCCCCATCGCTACAGGCCCGGGACCGTGGCTCTGCGTGAGATCCGCCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTTCCCTTCCAGCGTCTGGTCCGAGAGATCGCACAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCCGCCATCGGAGCGCTGCAGGAGGCCAGCGAGGCGTATCTGGTGGGTCTGTTTGAGGACACTAACCTGTGCGCCATCCATGCCAAGCGTGTGACCATCATGCCCAAAGACATCCAGCTGGCGCGCCGCATCCGTGGAGAACGCGCCTGAGCCTCCGTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTGTTTGTTGGTAGATTTAGCGTGGGGTGGGGGGTTGGCGGTGATAAACGTGGTCGTCTCTCTGTTTTATGGCAGCAGACTATTAGGGTACTTCCTGTTTGCATGTACCAGCCGGTGCCTGATCAGCCTCACACACACACACACACACACACGAGTGAAGCGGTCAGGGCTGATGTCTGCGTTCGGGGCGTCAGGGCCTCTCCTGCAGGGTGCTAGAACAGCCCTGACCCTTCCCAGAGTGCCCTGCACCGTCCATCCTGAGCTGTGTGTGTGTGGGTGTGTGTGTGTCGATCAGCACGGGGATTTCTACACAAGTCCGAGCATCTCTCCAGCAAATGTTTATTATTGCAATATTATAAATTACTTTGAATAATTGTTTGTTTTTTTTAAATGCATTCATATAAGCTTGTTTCCTAGATCTAGAGCGTATTTTTCAAGAGGTGGAGATTCTTATAAAGACATTTTTACATCACAAATCATGTTTATTTTCTAAAAGCAAACGGAGAATAATGTGTCCGTCCGCGTTTCACTTCCCTTCTCTTGGGTCTTAAGATAGGAACACGATCATTTGAGTTGAATAAATATATTGGCTTGATACTGTTTTTCAGTTTTGCCACGTGAGTTTGTTTTCCTGACCGAGCAGAAGTCTGTTTTCTAGTCTCATCCGTCACCGTCACAGGATTCCTCAGGCAGACATGGAAACATTATCATTAATCCTGCTTGATATGTGGGTGTTTCTTGTGTTTCCCTTTGACTACAGAACATTCAGGTGTTTAAATAAACTGATCTTTGTAATTTGAAATTTCTCTTAATTGCGTAATAAATGGATGTCACACACTTTTTTTGTGGGTTGTCTTTTATTGTGAAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU450107 lncRNA downstream 9220 166130 ~ 166359 (-) True G393073
TU450137 lncRNA downstream 15810 159503 ~ 161366 (-) True G393102
TU450111 lncRNA upstream 15820 203903 ~ 205595 (-) False G393077
TU450112 lncRNA upstream 15820 203903 ~ 205595 (-) True G393077
CI01000218_00173197_00175957.mRNA mRNA downstream 928 173127 ~ 176248 (-) True CI01000218_00173197_00175957
CI01000218_00167659_00171329.mRNA mRNA downstream 5847 167094 ~ 171329 (-) False CI01000218_00167659_00171329
CI01000218_00155323_00156947.mRNA mRNA downstream 20229 155196 ~ 156947 (-) True CI01000218_00155323_00156947
CI01000218_00119041_00133536.mRNA mRNA downstream 43640 119041 ~ 133536 (-) True CI01000218_00119041_00133536
CI01000218_00064161_00064417.mRNA mRNA downstream 112703 64076 ~ 64473 (-) True CI01000218_00064161_00064417
CI01000218_00198649_00204828.mRNA mRNA upstream 10151 198234 ~ 204828 (-) False CI01000218_00198649_00204828
CI01000218_00214048_00223824.mRNA mRNA upstream 25965 214048 ~ 223824 (-) True CI01000218_00214048_00223824

Expression Profile