RNA id: CI01000244_00049224_00062275.mRNA


Basic Information

Item Value
RNA id CI01000244_00049224_00062275.mRNA
length 1631
RNA type mRNA
GC content 0.50
exon number 10
gene id CI01000244_00049224_00062275
representative True

Chromosome Information

Item Value
chromosome id CI01000244
NCBI id null
chromosome length 62968
location 49210 ~ 62275 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTCAGTGGAACGGACTGACCGGACAGATAATCATAAACAAGACGGACGGCCTGAGGAAAGATTTCGATCTCGACATCATCAGTCTGAAAGAGGATGGGATGGAAAAGCAGTTTATGGAAAGTGGTCGTTTTAACAAAGTGTGGAAGAAGATTGGTGTGTGGAACTCAAACACTGGCCTTAACCTGACAGACAGCAACAAAGACAAAAACGCCAACGTGACCGACTCCATGGCCAACCGGACACTTATTGTCACCACAATTCTGGAAAACCCGTATGTGATGTACAAGAAGTCAGATAAGCCGCTGTATGGGAACGACCGGTTTGAAGGCTACTGTTTGGACCTGCTGAAGGAATTGTCCAACATCCTGGGCTTTTCCTATGAGGTCAAACTGGTGTCTGATGGGAAATATGGAGCCCAGAATGACAAAGGAGAGTGGAACGGCATGGTCAGAGAGCTAATCGATCATGTGGCAGATTTGGCCGTAGCACCGCTCACCATCACTTACGTGAGAGAGAAAGTCATTGATTTTTCCAAGCCCTTCATGACTCTGGGAATCTCTATTCTCTACCACAAACCCAATGGCACCAATCCAGGCGTGTTCTCCTTCCTAAACCCGCTCTCTCCGGACATCTGGATGTATGTGCTGCTGGCCTGCCTCGGGGTCAGCTGTGTGCTGTTCGTCATCGCCAGGTTTACCCCGTATGAATGGTACAACCCTCATCCCTGCAACCCTGATTCTGATGTGGTTGAGAACAACTTCACTTTAATCAACAGTGTTTGGTTTGGGGTTGGAGCCCTTATGCAGCAAGGTTCGGAGTTAATGCCCAAGGCTTTGTCCACCAGGATTGTTGGAGGGATCTGGTGGTTCTTCACCCTCATCATCATCTCGTCCTACACGGCTAACCTGGCCGCCTTCCTCACCGTGGAGCGAATGGACTCGCCCATAGACTCGGCCGATGACCTGGCCAAACAGACCAAGATCGAGTACGGTGCCGTGAGGGACGGCTCCACTATGACTTTCTTTAAGAAATCAAAGATCTCCACCTATGAGAAGATGTGGGCGTTCATGAGCAGCCGGAAGAACACGGCGCTGGTGAAGAATAACAGAGAGGGCATCCAGCGTGTGCTGACCACAGACTACGCTCTTCTGATGGAGTCCACCAGCATCGAGTACATCAGCCAGAGAAACTGCAACCTCACACAGATCGGCGGCCTCATCGACTCGAAGGGCTACGGAGTGGGAACTCCTATCGGTTCCCCGTATCGTGACAAGGTGACCATCGCCATCCTGCAGTTACAGGAAGAGGGGAAGCTCCACATGATGAAGGAGAAGTGGTGGCGAGGAAACGGATGTCCCGAGGAGGACAGTAAAGAGGCCAGCGCTCTGGGCGTGGAGAACATCGGAGGAATCTTCATCGTGCTGGCGGCCGGACTCGTCCTCTCCGTGTTTGTGGCGATCGGGGAGTTCATCTATAAGTCCAGGAAGAACCTGGACATCGAAGAGATGGATGTTCAGTCTGCATCTGAAACTAATATGGACTGTGAATTGAGTTCAAGTATTTTATTATTGATCCACTTTGGTGATGGGCTTATACTGAGAAAACACCATCATTGATTTCTATCAATAAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K05201 GRIK1; glutamate receptor, ionotropic kainate 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU457228 lncRNA downstream 15814 30714 ~ 33396 (-) True G398616
TU457203 lncRNA downstream 20397 24904 ~ 28813 (-) True G398599
TU457205 lncRNA downstream 27536 19887 ~ 21674 (-) True G398601

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017426 True 2522 mRNA 0.53 15 NC_007126.7 42626957 ~ 42679838 (+)
bowfin (Amia calva) AMCG00003973 True 642 mRNA 0.48 3 CM030121.1 27492506 ~ 27506149 (+)