Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001532 |
| length | 1212 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 6 |
| gene id | XLOC_000965 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 5504128 ~ 5543065 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007507 | heart development | biological_process |
| GO:0070527 | platelet aggregation | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0003128 | heart field specification | biological_process |
| GO:0072378 | blood coagulation, fibrin clot formation | biological_process |
| GO:0003181 | atrioventricular valve morphogenesis | biological_process |
| GO:0007044 | cell-substrate junction assembly | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0007160 | cell-matrix adhesion | biological_process |
| GO:0042060 | wound healing | biological_process |
| GO:0062023 | collagen-containing extracellular matrix | cellular_component |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005102 | signaling receptor binding | molecular_function |
| GO:0005178 | integrin binding | molecular_function |
| GO:0043394 | proteoglycan binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-6545 | Predicted to enable integrin binding activity and proteoglycan binding activity. Acts upstream of or within atrioventricular valve morphogenesis; heart field specification; and somitogenesis. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in several structures, including fin; integument; mesoderm; musculature system; and periderm. Human ortholog(s) of this gene implicated in calcium oxalate nephrolithiasis; membranoproliferative glomerulonephritis; and spondylometaphyseal dysplasia corner fracture type. Orthologous to human FN1 (fibronectin 1). |
| ensembl_id | ENSDART00000103754 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00001531 | lncRNA | downstream | 24676 | 5509804 ~ 5511662 (-) | False | XLOC_000965 |
| TCONS_00001530 | lncRNA | downstream | 26753 | 5506524 ~ 5509585 (-) | False | XLOC_000965 |
| TCONS_00003315 | lncRNA | downstream | 183896 | 5350872 ~ 5352442 (-) | True | XLOC_000962 |
| TCONS_00003314 | lncRNA | downstream | 339617 | 5195698 ~ 5196721 (-) | True | XLOC_000961 |
| TCONS_00003313 | lncRNA | downstream | 339729 | 5195078 ~ 5196609 (-) | False | XLOC_000961 |
| TCONS_00003317 | lncRNA | upstream | 472165 | 6014730 ~ 6024808 (-) | False | XLOC_000967 |
| TCONS_00003318 | lncRNA | upstream | 478951 | 6021516 ~ 6024808 (-) | True | XLOC_000967 |
| TCONS_00003319 | lncRNA | upstream | 517461 | 6060026 ~ 6085752 (-) | False | XLOC_000968 |
| TCONS_00003320 | lncRNA | upstream | 617066 | 6159631 ~ 6173701 (-) | True | XLOC_000969 |
| TCONS_00003321 | lncRNA | upstream | 678316 | 6220881 ~ 6225273 (-) | False | XLOC_000970 |
| TCONS_00001526 | mRNA | downstream | 80836 | 5449777 ~ 5455502 (-) | False | XLOC_000964 |
| TCONS_00001527 | mRNA | downstream | 80840 | 5449870 ~ 5455498 (-) | True | XLOC_000964 |
| TCONS_00001525 | mRNA | downstream | 141547 | 5363569 ~ 5394791 (-) | True | XLOC_000963 |
| TCONS_00001524 | mRNA | downstream | 141586 | 5354489 ~ 5394752 (-) | False | XLOC_000963 |
| TCONS_00001512 | mRNA | downstream | 2241293 | 3100244 ~ 3295045 (-) | True | XLOC_000951 |
| TCONS_00001533 | mRNA | upstream | 63895 | 5606460 ~ 5746030 (-) | False | XLOC_000966 |
| TCONS_00001534 | mRNA | upstream | 185785 | 5728350 ~ 5745420 (-) | True | XLOC_000966 |
| TCONS_00001535 | mRNA | upstream | 255983 | 5798548 ~ 6028876 (-) | False | XLOC_000967 |
| TCONS_00001536 | mRNA | upstream | 525871 | 6068436 ~ 6085750 (-) | True | XLOC_000968 |
| TCONS_00001537 | mRNA | upstream | 676067 | 6218632 ~ 6225285 (-) | False | XLOC_000970 |
| TCONS_00001523 | other | downstream | 457850 | 5078371 ~ 5078488 (-) | True | XLOC_000959 |
| TCONS_00001521 | other | downstream | 1325686 | 4210498 ~ 4210652 (-) | True | XLOC_000957 |
| TCONS_00001518 | other | downstream | 2238089 | 3298112 ~ 3298249 (-) | True | XLOC_000952 |
| TCONS_00001517 | other | downstream | 2238250 | 3298006 ~ 3298088 (-) | False | XLOC_000952 |
| TCONS_00001516 | other | downstream | 2238402 | 3297848 ~ 3297936 (-) | False | XLOC_000952 |
| TCONS_00001538 | other | upstream | 678316 | 6220881 ~ 6222249 (-) | False | XLOC_000970 |
| TCONS_00001542 | other | upstream | 910839 | 6453404 ~ 6453519 (-) | True | XLOC_000973 |
| TCONS_00001543 | other | upstream | 1599474 | 7142039 ~ 7142143 (-) | True | XLOC_000974 |
| TCONS_00001545 | other | upstream | 2031786 | 7574351 ~ 7603573 (-) | False | XLOC_000977 |
| TCONS_00001549 | other | upstream | 2089554 | 7632119 ~ 7650072 (-) | False | XLOC_000978 |
