RNA id: CI01000300_01623190_01629652.mRNA


Basic Information

Item Value
RNA id CI01000300_01623190_01629652.mRNA
length 2297
RNA type mRNA
GC content 0.39
exon number 6
gene id CI01000300_01623190_01629652
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1622883 ~ 1631039 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGACGCTATTTGAACATTTCTGAGTGATGCTGTCATTGCTGCAAAAGTTTCCAAAATATTACAATGTAGAGATTGAATGTAACAAAACAGTGCTTCAAAATGGGCACAACTGCAATGTGGGACTGTGTAATCCAGTAACATGACAGAATTGGTCAAGGCCTGATTACTTTTGGCAAGGCACTGTAAATGCTTATTATGTAAACACTTGAATGAAATACATGCTCCTCTTGTATGATTCTTACAAGTTTCTACTTTTCCTTGGAAATGTGTGAAAATACGATGAAGATAAAAAGTAGTTCTTACAGCCAGAAACTGAACTCAAGGGAATGCCGAATATGCAGATTCAATAAAGCTGAATAACCCTGGTGATGTCTTTGGTTTCTTGCCATTTCCTGACAAGATATAAATAATGTTGATACAGCATGTGCTCTACTGTTTCTCAGCTCTAAGATGTACAGTAAAGTAAGGCCAGAGTTTTGGTATTAGCAAAACAAGTACCTTAAAATACTATGCAATGCTTTCTTGGGGCTGGGTGAATCCATGCAAACAAAATGATATAGTACTTGTGTCAAATTGGCACTAGGTAAATTCAGATAAATGTGATGATTTAAGGTGTTAAGGTGTCATTTTATGTAGGACAGTGGTTCTCAAACTTTCACTTTGGACATCAAGTGGCCACCCAACACAATACTAAAATTATTGTACAAACGTGAATAAAAAATGTCCTTTAAATTAGAACATTTTATCAGTACAAATTTATTAGTATGCTACTACCATGACTTTTGTAGGTGGAATAGGAAAAATGAAGCTGACGTCCTCTGCAAATCAGTAGGGCACTTGTGAATGACACAAAATGTTCCTGAGAGTCTTTGGCAGGGCTAAGATTAGCAAACACTGCCACTGTAGTAATTTGTAAACATAACATGCAAATTTATGAGTGCAATTATACAGTCCTGGGGAAAATCTAATTATGTGGAGTGTAATGGCCTCTAGTGGTTGCGTACATCCATTGCACAAATACTCCGCTGCTTTTATAGTTTAATTTAGATTCGATTTTGTTTTTGTTATATTGTTCAAAAACCTTACCTGCATAAGAGGAATTTGTACCACATTTAAGAAAACGTTCACTTTCTTTATTTAAATTTACTTACTGTCAAAAATACATCAAGCCACTCTATCATAAACATCTCTCATGCAGTCGACCCCGCCCACGTTTTTCATTGGCTCGCTCATGCCACTTCGGCGTCCGTGATTGGTCCACTCCGCTCACGTCTGCGTCAACCTGCCACAGCGGAAGTGAGGGCTTCAGAAGAAATAGCTGCTAGTTTAATAAGCATGTTCGCTATTATAGTATTGCTCATTGTAAATATTTCCCACTAACAAAAATGAATGTTTTTACCTGCGTCGTGTTGTTTCTCGTAAGTGCCGCAGCTGCTAACAAAAGCGGGGACGATGAGTGGGTGCATCTGCCAAATAAATGTGAAGTGTGCAAATTTGTGAGTATTGAGATGAAGTCTGCATTTGAAGAGACTGGCAAAACAAAAGAAGTGATTGAAACCAACTACCGATTCTTGGATGACAAAGGTGCACCGCCAATCAAATATGTGAAATCTGATATTCGTTTCATAGAGGTGATGGAGAACGTTTGCTCAAGGATTATGCAGTACAATCTACACAAAGAGAGAGATGGCAGCAATCGTTTTGCAAAGGGTATGTCTGAGACATTCTCTACCTTACATAACCTGGTTAATAAAGGCGTGAAGGTGGTCATGGACATTCCCTATGAACTGTGGAACGAGACCAGTGCAGAAGTAGCTGACCTCAAAAAACAGTGTGATGTGATGGTAGAGCAGTATGAAGAAGTCATCGAAGACTGGTATAAAGGCAGCCAGGAGGAAGATCTCACCACTTACCTGTGTGAAAAACATGTGCTGAAAGGACAAGACACTGTGTTTATGTACGTGATGTCACTTACAGGGAATGTTTGAGTTCGTTTTTTCTTAATACTCTTCTGTACAGTATTGTTTACTTCAACTGTTTATCTGATATCAGGCTTCACTCTTTCCAAAAGCTGTATGTCTGTAAGTGTGTGAGCTCCTGCAGGTGTTTGTATGCCTATTCAGATTAGTGTTGTTTGGAGTGCGATGTGGAGTGTGTATGAAAGTTATTGACCGGAGATTGAACTGTATATGCAAATGTTGTAATGGGAGGAACATGTGCGGGTTTTGTGTTTCTTGGCAGCAGCTCATTAGCTGAGGCTTTTGATAAGTGAGTTGTAAATGACTGATGAATAAA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470422 lncRNA downstream 3799 1618850 ~ 1619084 (-) True G409424
TU470400 lncRNA downstream 8230 1563145 ~ 1614653 (-) True G409402
TU470409 lncRNA downstream 29573 1592979 ~ 1593310 (-) True G409411
TU470387 lncRNA downstream 71158 1551354 ~ 1551725 (-) True G409399
TU470354 lncRNA downstream 83067 1539580 ~ 1539816 (-) True G409374
TU470376 lncRNA upstream 1451 1632490 ~ 1632828 (-) True G409388
TU470456 lncRNA upstream 132346 1763385 ~ 1763621 (-) True G409454
TU470365 lncRNA upstream 141052 1772091 ~ 1784816 (-) False G409380
TU470366 lncRNA upstream 141052 1772091 ~ 1774588 (-) True G409380
TU470461 lncRNA upstream 147462 1778501 ~ 1780832 (-) True G409459
CI01000300_01537230_01547051.mRNA mRNA downstream 75832 1537176 ~ 1547051 (-) True CI01000300_01537230_01547051
CI01000300_01387744_01388660.mRNA mRNA downstream 233645 1387744 ~ 1389238 (-) True CI01000300_01387744_01388660
CI01000300_01384469_01386368.mRNA mRNA downstream 236515 1384319 ~ 1386368 (-) True CI01000300_01384469_01386368
CI01000300_01381458_01383409.mRNA mRNA downstream 239474 1381005 ~ 1383409 (-) True CI01000300_01381458_01383409
CI01000300_01360356_01366631.mRNA mRNA downstream 256252 1360310 ~ 1366631 (-) True CI01000300_01360356_01366631
CI01000300_01634104_01696058.mRNA mRNA upstream 3065 1634104 ~ 1696058 (-) True CI01000300_01634104_01696058
CI01000300_01726202_01727298.mRNA mRNA upstream 94995 1726034 ~ 1727298 (-) True CI01000300_01726202_01727298
CI01000300_01730095_01731153.mRNA mRNA upstream 99056 1730095 ~ 1731153 (-) True CI01000300_01730095_01731153
CI01000300_01733901_01736015.mRNA mRNA upstream 102621 1733660 ~ 1736022 (-) True CI01000300_01733901_01736015
CI01000300_01742156_01744802.mRNA mRNA upstream 111117 1742156 ~ 1744802 (-) True CI01000300_01742156_01744802
TU469190 other downstream 1335996 279917 ~ 286887 (-) True G408318
TU470565 other upstream 656142 2287181 ~ 2288973 (-) True G409558
TU470823 other upstream 1232119 2863158 ~ 2863998 (-) True G409775
TU471599 other upstream 2170100 3801139 ~ 3808207 (-) True G410498
TU471625 other upstream 2445725 4080204 ~ 4082102 (-) True G410508
TU471627 other upstream 2445725 4076764 ~ 4080539 (-) True CI01000300_04075307_04079312

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001665 True 1659 mRNA 0.39 6 NC_007112.7 10462692 ~ 10473630 (-)