RNA id: CI01000300_01742156_01744802.mRNA


Basic Information

Item Value
RNA id CI01000300_01742156_01744802.mRNA
length 801
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000300_01742156_01744802
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1742156 ~ 1744802 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAGGATTCAGAATATGTTAGACATGCTGCGCCTTCTGATCATATTAAGTTTGCTCAGAAGAGCTTACCTTTCAGAAATTGTAGGACAAGGAGACACAAATGTTGTGGTGGGTCAGGATGCTTCATTCTCTTGTACGCTGCCAAACCCGTCTGGAGTCAAACATGTCACCTGGCAGCGGGTGCGTGCGGATCAGTCTGTACAAATTCTGGCTACATTCAGCGAACGCTTCCAGGATAATGTGGATAAGGAGTATGCCAGTAAAGTCACTTTGACTCGTGCATCATTTAATTCAACATCTATTGAGATCAAAAACACAACATTTGAAGATGAGGCTTGCTACATTTGTTCCTTCAAAGTGTATCCATCAGGACCCATACGAAAAACCATGTGCCTCACTGTTAAAGGTATCTCAGAAATAACAGCGGAAGTGAATTCTTCACCCACTTCTGATACAAATGTTGTAGTCTCTTGTTCAGCCACCGGTAAACCAACTCCAACAATCCAGTGGAAATCTGCAGAGAATGAGCTGAACTACATGTCAAATAATTTCACAAACCTCAACTTAGATAGTTCAAGCACCATTACAAGTAACATCACGCTTCCACTGTCACAGTTTCATGGGAAGTACGTGGAATGTTTGGTTCAGAGTGACGGTGTGGAGAAGAGGTACCAAATTTACGTGCCTCAACAAGATGATGATAAAGAAAATGACACATTAAGAAGTTATATAATTCCGATGTTGGTCGTGGTTATTTTCAGTATTGTCGTTATTGCCTTCTACCTTCACACAAAGTTAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470376 lncRNA downstream 109328 1632490 ~ 1632828 (-) True G409388
TU470422 lncRNA downstream 123072 1618850 ~ 1619084 (-) True G409424
TU470400 lncRNA downstream 127503 1563145 ~ 1614653 (-) True G409402
TU470409 lncRNA downstream 148846 1592979 ~ 1593310 (-) True G409411
TU470387 lncRNA downstream 190431 1551354 ~ 1551725 (-) True G409399
TU470456 lncRNA upstream 18583 1763385 ~ 1763621 (-) True G409454
TU470365 lncRNA upstream 27289 1772091 ~ 1784816 (-) False G409380
TU470366 lncRNA upstream 27289 1772091 ~ 1774588 (-) True G409380
TU470461 lncRNA upstream 33699 1778501 ~ 1780832 (-) True G409459
TU470516 lncRNA upstream 235928 1980730 ~ 1981204 (-) True G409513
CI01000300_01733901_01736015.mRNA mRNA downstream 6134 1733660 ~ 1736022 (-) True CI01000300_01733901_01736015
CI01000300_01730095_01731153.mRNA mRNA downstream 11003 1730095 ~ 1731153 (-) True CI01000300_01730095_01731153
CI01000300_01726202_01727298.mRNA mRNA downstream 14858 1726034 ~ 1727298 (-) True CI01000300_01726202_01727298
CI01000300_01634104_01696058.mRNA mRNA downstream 46098 1634104 ~ 1696058 (-) True CI01000300_01634104_01696058
CI01000300_01623190_01629652.mRNA mRNA downstream 111117 1622883 ~ 1631039 (-) True CI01000300_01623190_01629652
CI01000300_01812173_01822492.mRNA mRNA upstream 67344 1812146 ~ 1822492 (-) True CI01000300_01812173_01822492
CI01000300_01824226_01831566.mRNA mRNA upstream 79161 1823963 ~ 1831566 (-) True CI01000300_01824226_01831566
CI01000300_01844908_01942907.mRNA mRNA upstream 99496 1844298 ~ 1942907 (-) True CI01000300_01844908_01942907
CI01000300_01963369_01973641.mRNA mRNA upstream 218482 1963284 ~ 1974476 (-) True CI01000300_01963369_01973641
CI01000300_01988184_02137544.mRNA mRNA upstream 243271 1988073 ~ 2137544 (-) True CI01000300_01988184_02137544
TU469190 other downstream 1455269 279917 ~ 286887 (-) True G408318
TU470565 other upstream 542379 2287181 ~ 2288973 (-) True G409558
TU470823 other upstream 1118356 2863158 ~ 2863998 (-) True G409775
TU471599 other upstream 2056337 3801139 ~ 3808207 (-) True G410498
TU471625 other upstream 2331962 4080204 ~ 4082102 (-) True G410508
TU471627 other upstream 2331962 4076764 ~ 4080539 (-) True CI01000300_04075307_04079312

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001675 True 766 mRNA 0.44 3 NC_007112.7 10667447 ~ 10669436 (-)