RNA id: TCONS_00001539


Basic Information

Item Value
RNA id TCONS_00001539
length 910
lncRNA type retained_intron
GC content 0.49
exon number 5
gene id XLOC_000970
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6218632 ~ 6225285 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACAAACATGGCGAAGTTTGTTCTTGCGGGTTGGAAAGGCTGATTGTCCTTATTATGCAAAGGCTGAGCTTCTTGCTGATGTGCTGCAAAGAAACCTGCCTGATTTTCACATCCACAAGATCCCTGTGCCGCCCGATGACTGGAAGAAATGGCTGGAGGACACCTGCGCATCTATTGGCTGGAAACACTCAAGCTCTCCTCTAGTATGGAGGGAGCTGATTGATCGTGGTGGGAAAGGCATGCTGCTCGGAGGATTCAGTGATTTCCTGGAGCATGCTCAGGGTTATTATAACATCACCTCAGACATGAACTCTGATCTGATGCTTAAAATTGCAGAAGAGAATCAAGCGACCAAAGAGCTGTGTATGGAGGAGGAAGTTCATCGACTCAAGTCTCTCAGGCCTCTGCACATCTGGATCAGCAGTGCTCTGAACCCCGTCTGCTACAGCCTCATTCCTCACCTGTTCACCCCGGGGCTGTTTTCAGGTCTGCCCATCTTCAGCCTTCACCTCATGGACACCAGCGGTTCTGAGGAAATGTTGCAAGCACTCAAGATGGAAACGGTGGACCTCGCCATACCTCGGCTCCATGAAGTAACTATCCATTCAGACCAGATGCTAGCATTCCAGGAAGCCCACTTCATTATTTTTTTGGATGACCAGCAGCCTGCAGGTGAATATAATGATGAGCAGAATGACAAGGACCAGGTAGCGGAACATTTTCATCGCTATGGGCAACTCATCGAGACGAACGCGCAGAAAGACGTAAGGGTGCTAGTGGCAGGAGATTTCTTCATTAATATGAAGTGTTCACTGTTGATTGAAAACGCACCCTCTATTGATCCGCGCAACTTTGTGGCAATGACAACGCAACTGGAATACGAGGCCAGAACTCAGCTTGCACAGAAGC

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006107 oxaloacetate metabolic process biological_process
GO:0006108 malate metabolic process biological_process
GO:0006734 NADH metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0016615 malate dehydrogenase activity molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function
GO:0003824 catalytic activity molecular_function
GO:0030060 L-malate dehydrogenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-384 Predicted to enable L-malate dehydrogenase activity. Predicted to be involved in NADH metabolic process; dicarboxylic acid metabolic process; and tricarboxylic acid cycle. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human MDH1B (malate dehydrogenase 1B).

Ensembl:

ensembl_id ENSDART00000131254

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003320 lncRNA downstream 47851 6159631 ~ 6173701 (-) True XLOC_000969
TCONS_00003319 lncRNA downstream 135800 6060026 ~ 6085752 (-) False XLOC_000968
TCONS_00003317 lncRNA downstream 196744 6014730 ~ 6024808 (-) False XLOC_000967
TCONS_00003318 lncRNA downstream 196744 6021516 ~ 6024808 (-) True XLOC_000967
TCONS_00003316 lncRNA downstream 678489 5536338 ~ 5543063 (-) True XLOC_000965
TCONS_00003323 lncRNA upstream 172926 6398199 ~ 6400326 (-) True XLOC_000971
TCONS_00003324 lncRNA upstream 1319776 7545049 ~ 7554163 (-) False XLOC_000975
TCONS_00002906 lncRNA upstream 1319776 7545049 ~ 7554339 (-) True XLOC_000975
TCONS_00001548 lncRNA upstream 1355896 7581169 ~ 7581987 (-) True XLOC_000977
TCONS_00001551 lncRNA upstream 1409540 7634813 ~ 7637680 (-) False XLOC_000978
TCONS_00001536 mRNA downstream 135802 6068436 ~ 6085750 (-) True XLOC_000968
TCONS_00001535 mRNA downstream 192676 5798548 ~ 6028876 (-) False XLOC_000967
TCONS_00001533 mRNA downstream 475522 5606460 ~ 5746030 (-) False XLOC_000966
TCONS_00001534 mRNA downstream 476132 5728350 ~ 5745420 (-) True XLOC_000966
TCONS_00001532 mRNA downstream 678987 5536338 ~ 5542565 (-) False XLOC_000965
TCONS_00001541 mRNA upstream 178278 6403551 ~ 6494384 (-) True XLOC_000972
TCONS_00001544 mRNA upstream 1337043 7562316 ~ 7570181 (-) True XLOC_000976
TCONS_00001546 mRNA upstream 1349078 7574351 ~ 7603734 (-) False XLOC_000977
TCONS_00001547 mRNA upstream 1349174 7574447 ~ 7582859 (-) False XLOC_000977
TCONS_00001550 mRNA upstream 1409185 7634458 ~ 7659870 (-) False XLOC_000978
TCONS_00001523 other downstream 1143064 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001521 other downstream 2010900 4210498 ~ 4210652 (-) True XLOC_000957
TCONS_00001518 other downstream 2923303 3298112 ~ 3298249 (-) True XLOC_000952
TCONS_00001517 other downstream 2923464 3298006 ~ 3298088 (-) False XLOC_000952
TCONS_00001516 other downstream 2923616 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001542 other upstream 228131 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001543 other upstream 916766 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001545 other upstream 1349078 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001549 other upstream 1406846 7632119 ~ 7650072 (-) False XLOC_000978
TCONS_00001556 other upstream 1576258 7801531 ~ 7801646 (-) True XLOC_000982

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_03206204_03214303.mRNA True 1508 mRNA 0.46 9 CI01000299 3206185 ~ 3214303 (-)