RNA id: TCONS_00001544


Basic Information

Item Value
RNA id TCONS_00001544
length 2646
RNA type mRNA
GC content 0.41
exon number 12
gene id XLOC_000976
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7562316 ~ 7570181 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAAACTTTGTTGTGATAAGGATTTGTCTTTGGACATTATTAAGGATGGAGAAGTTGAGTTACACGTTCAGTCAGCAATATGAGGAGAAAATTCGCCCTTGTATCGACACTATCGATAATTTACGGTCTCTGGGAGTCGAAAAGGACCTCGCGTTGCCTGCCATCGCCGTCATAGGAGACCAAAGCTCGGGAAAGAGTTCGGTTCTGGAGGCGCTGTCAGGAGTTCCGTTACCCAGGGGCAGTGGGATTGTTACACGGTGCCCTCTCGAGCTCAAGATGATAAGAACTAAAGACCAAGATAAGTGGCATGGGAGAATCAGTTACAAAACCTATGAGGAGGACTTCGATGACCCAGCGGAAGTGGAGAAAAAGATCCGCCAagCCCAAGATGAGATGGCTGGAGCAGGTGTTGGTATCAGTGAAGAACTCATCAGTCTGCAGATCACCTCTGCCAATGTTCCTGACCTCACTCTCATTGACCTCCCTGGCATTGCACGAGTGGCCGTCAAGGGTCAACCTGAGAACATTGGAGATCAGATTAAAAGACTAATCAGGAAGTTTGTTACAAGGCAAGAGACAATCAACCTGGTCGTGGTGCCATGCAATGTTGACATCGCCACCACAGAAGCATTGCAGATGGCTCAGGCAGAGGATCCTGATGGCGAAAGGACTTTAGGCATCTTAACAAAGCCAGACCTGGTGGACAAGGGCACTGAAGGGACAGTTGTAGACATTGTCCACAATGAGGTCATTCACCTCACTAAAGGCTACATGATTGTAAGGTGCAGAGGGCAAAAAGAGATTATGGATCAGGTCACTCTAAATGAGGCTACAGAAACAGAGAGTGCCTTCTTCAAAGACCATCCTCATTTCAGCAAACTCTATGAAGAGGGTTTTGCTACTATTCCCAAGTTGGCAGAGAAACTAACAATTGAATTGGTTCATCACATTCAGAAATCTCTACCTCGCCTAGAAGAGCAAATAGAGACAAAGCTTGCTGAAACACAGAAGGAACTAGAGGCATATGGCAATGGGCCTCCATCAGAACCAGCAGCAAGACTCAGCTTTTTCATTGACAAAGTTACAGCTTTCAATCAAGATATGCTGAACCTGACGACTGGGGAGGATGTTAAATGTACTACAGATCTACTGCTTTTCCCAGAACTTCGGCAAGAATTTGCAAAATGGAGTCACATCTTGGATCGTTCAGGGGATTCATTCAACAAAAAGATTGAGAAAGAAGTTGATAACTACGAAGTCAAGTACCGGGGAAGAGAGCTACCAGGATTCATCAACTACAAGACCTTTGAGGGGCTTGTCAGGGACCAGATCAAGCTGTTGGAGGAACCTGCGTTAAAGACACTGAAGACCGTCTCTGATGTGGTTAGAAAGAAGTTCATCCAACTGGCCCAGTGCAGTTTCATTGGATTCCCTAATCTTCTGAAAATAGCAAAGACTAAGATTGAAGGCATTAAGCTAAACAAAGAATCCCTGGCAGAATCTATGCTGAAAACTCAATTCAAGATGGAGCTCATCGTTTACAGCCAAGATGGCACATACAGCCAGAGTCTAAAGCATGCAAAGGATAAATTGGAGGAGATGGAAAAAGAAAGGCCACAACCGAAAATAAAACTGCCCTTACTTTCGAGTTTCGACCTTGGCACAGACAATCATGCCACCTTGCGTGAGATGAGGTTGCACCTTAAATCCTACTACACAATTGCAAGCAAGCGTCTAGCTGACCAGATCCCAATGGTGATCCGCTACATGCTGCTGCAGGAAGCTGCTTTGGAGCTGCAAAGGAACATGTTACAGCTGCTGCAAGATAAAGACGGTGTAGACAACCTGCTTAAAGAGGACTGTGACATTGGCCAAAAGCGAGAAAACTTACTGAGCCGCCAGAAACGTTTAATGAAGGCACGCAGCCTCTTGGTCACCTTTTAGAAGTTACTTTCATAGATTACTGCAACATTTTAATGCAATGAAATCGTATGCTGGTACTGAAGAAAATTATCAGCATTGACAGCAAAGAAGTAAACattcatgctgtttttttttttaaagaaatattccTTTGAGGAAACATGGTTTTTCAAAGCTACCTTTGTTATTTGAAGTGCGTCTTGACCAGTGTCAGATGCTGTATATGACTTTTGGGACATGGTATTCTTATTTAAGTACAAATTGATGAAGTGTCAGAACATTCAGTAAATTCATGTCATTTCAGTACTCtaaaaaaatatgacaatttaaTGTTTATATGTTACAACCAATGTTTCGAAAATTGATAAACTATTTAGTGCTTTGTACCAGAAATGCTgcaacagatatttttttaaataccgtTTTCgaggtataccatggtttggaaaagtcatggttttaaaaccgtcaacatTTCCTGTTATAcctttcctaaggtatgtgtaagatttttttatttacttttttttaggacaacagtatgtccagcaaaaaaatatatccaaaaataccattttaaattttaaagaaatctgtgtttttggaactaatgaagacagcagaagtcaataattcatttggaTTATTTAGCTGGACATATTTACTGAatttagatattaatatttacaaaatattttaaatgttttacaaaatattttata

Function

GO:

id name namespace
GO:0003374 dynamin family protein polymerization involved in mitochondrial fission biological_process
GO:0098884 postsynaptic neurotransmitter receptor internalization biological_process
GO:0009615 response to virus biological_process
GO:0009617 response to bacterium biological_process
GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane biological_process
GO:0048285 organelle fission biological_process
GO:0031623 receptor internalization biological_process
GO:0061025 membrane fusion biological_process
GO:0046685 response to arsenic-containing substance biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0000266 mitochondrial fission biological_process
GO:0098844 postsynaptic endocytic zone membrane cellular_component
GO:0030424 axon cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0043197 dendritic spine cellular_component
GO:0044327 dendritic spine head cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030721-5 Predicted to enable GTPase activity and microtubule binding activity. Acts upstream of or within response to arsenic-containing substance; response to bacterium; and response to virus. Predicted to be active in several cellular components, including cytoplasm; microtubule; and nucleus. Is expressed in several structures, including digestive system; gill; heart; immune system; and muscle. Human ortholog(s) of this gene implicated in alopecia areata; avian influenza; liver disease; and prostate cancer. Orthologous to human MX1 (MX dynamin like GTPase 1) and MX2 (MX dynamin like GTPase 2).

Ensembl:

ensembl_id ENSDART00000103588

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002906 lncRNA downstream 7977 7545049 ~ 7554339 (-) True XLOC_000975
TCONS_00003324 lncRNA downstream 8153 7545049 ~ 7554163 (-) False XLOC_000975
TCONS_00003323 lncRNA downstream 1161990 6398199 ~ 6400326 (-) True XLOC_000971
TCONS_00003322 lncRNA downstream 1337031 6220881 ~ 6225285 (-) False XLOC_000970
TCONS_00001540 lncRNA downstream 1337031 6221701 ~ 6225285 (-) True XLOC_000970
TCONS_00001548 lncRNA upstream 10988 7581169 ~ 7581987 (-) True XLOC_000977
TCONS_00001551 lncRNA upstream 64632 7634813 ~ 7637680 (-) False XLOC_000978
TCONS_00002907 lncRNA upstream 89020 7659201 ~ 7659757 (-) True XLOC_000978
TCONS_00001553 lncRNA upstream 92457 7662638 ~ 7668555 (-) True XLOC_000979
TCONS_00001554 lncRNA upstream 129842 7700023 ~ 7701856 (-) True XLOC_000980
TCONS_00001541 mRNA downstream 1067932 6403551 ~ 6494384 (-) True XLOC_000972
TCONS_00001537 mRNA downstream 1337031 6218632 ~ 6225285 (-) False XLOC_000970
TCONS_00001536 mRNA downstream 1476566 6068436 ~ 6085750 (-) True XLOC_000968
TCONS_00001535 mRNA downstream 1533440 5798548 ~ 6028876 (-) False XLOC_000967
TCONS_00001533 mRNA downstream 1816286 5606460 ~ 5746030 (-) False XLOC_000966
TCONS_00001546 mRNA upstream 4170 7574351 ~ 7603734 (-) False XLOC_000977
TCONS_00001547 mRNA upstream 4266 7574447 ~ 7582859 (-) False XLOC_000977
TCONS_00001550 mRNA upstream 64277 7634458 ~ 7659870 (-) False XLOC_000978
TCONS_00001552 mRNA upstream 91910 7662091 ~ 7673376 (-) False XLOC_000979
TCONS_00001557 mRNA upstream 277606 7847787 ~ 7894255 (-) False XLOC_000983
TCONS_00001543 other downstream 420173 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001542 other downstream 1108797 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001538 other downstream 1340067 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001523 other downstream 2483828 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001521 other downstream 3351664 4210498 ~ 4210652 (-) True XLOC_000957
TCONS_00001545 other upstream 4170 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001549 other upstream 61938 7632119 ~ 7650072 (-) False XLOC_000978
TCONS_00001556 other upstream 231350 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001562 other upstream 348614 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001563 other upstream 349299 7919480 ~ 7919567 (-) True XLOC_000984

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_04186183_04196219.mRNA True 4765 mRNA 0.39 12 CI01000299 4184967 ~ 4197884 (-)