RNA id: TCONS_00019676


Basic Information

Item Value
RNA id TCONS_00019676
length 2369
RNA type mRNA
GC content 0.44
exon number 10
gene id XLOC_009861
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21425114 ~ 21441226 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAACATAGAAGTAGCCGCGCTTCGACGATGTCTTGCTGCCTGGGCTTTTGTTTATAAGTGTGTCTACAGTCAAACAACCACGAGAAAAGACCACGctGATCCTCAAAAGTCTTCTTGTCAGCATTGAAGATGTTTGCAAAAGCCACTAAGAACCTGCTCTCTGAGATAGACTCTGAAGGTTTCCTGATCCCAGTGTTGTGCCTGAATGACTCAGATGGTCTTAGTCCTCAGGCGCTGGTCATCAAGCGTAACCGATACTGGTTTTGGCAGCAACCCAAATACAAGCCAACAGACTTCAAACTGAGTGATGTTCTAGTTGGAGATCCCATAAATCCAGTTGTGGTTGAAACTGAATTTTTGACCTATAAAGGCAAAGTTATGGATACTAAAAGTGGAAGTGCTGTAGCAGAACTTGGGCCAGGGACCATTAATATAGGTGGCTCCGGATCCAGCAAACTGCAGTCATCATTTGGAAACTTAAAGAAACAGGAGCTGGATTTGCAGAAGCTCTTACATGATTCCAAATCCAGAGTTCTAGACATGCAGCACTCTCTGATCCAGCAGACACGGAACGCAAAGACGGAGGTGTTGGCGGTAGTGAAGGAACGAATCATTACCACTCAGCCCTGCACCATCACTGAGGAGGTTCAGGAAGGTGGTTCCTGCACTGGAATGTTTGGGTTCAATAAGACAATAAAGGTTTCATCTAATGATAAAGGAAAGCCTTCAATTGCGTACGACACTGATGTGTCTATCGACATCCCCCCCAAAACCACCCTTGCTTACAGCGTGATTGAATTAGACATTGCTCACACAGGACACTATGAACTGTGTCTGCTGCCAGCAGTCAAAGGTGGATTTGAAATTGATGGCCCAGTCAAGGTGAAACAAGCAGTCACAGTTAGTGCTGCACCAGGGAATCCAACCCACAACATGCAGAAAGAACTTGTAGGACTCGAAGGCCAGTTTAAAGTTCTGTCTAAACTGCCGTCTAGCACACGCTTCTCGTTATTCCAGCAGATCTCTCTACTCCTGCAGAACAGCGCAGTCATTAGCATTTTGGGGAGCACACTAGAGGACCTGTGTGGAGGGACACAGCCTGATCCCAGTACATTAGCCGAGGTGCCTGAACTGAAGGTTACACTGGAGCTCATACAGAAAAGTGCTGGTAAAAAACCCTCTGGACAACATCAGAAGCAAAGCACACTTACTGCCACACACCTGCTCATCAGTGCTCTAGACGAGATGAGTAAGCCAGCACTCTTCCTGCTCAAATCCTGCTGCAGTTACACAACCCTGCAAGCTCTGCTCCATCTTGTGCAGAATATGGCTTTAAATGAGAAATCCTCTCTGAAAGACGCTGCTCTGGATGTTTTAGCCGATGAGGTGGTTTTCAAAAACATTACATCACTCTTTAATTCCTGCAACGTGATGCTGCTCAAGGATGACAATTCACTTATTACAAAAATCAGCAACCCAGAAGATCGTCTTCCCCTCATGTTGTGCATTGCAGTCAAGGGTTTGGCTTCTCTTGCACCCCATGTTTGATAATCTGTTGTAACTTATGAAGACCAAAGGCCCCAAGAAGTTTCTCACTGCAGCCTGCAGTGGACATCCATCCCCACCAACATCCAAGTGTAAGCCACTGCTGCCTCACTGTAGACTACAGCATGATGACAAACTAGAACAAGTCCAATATGTAATGGACATGTATTtgtgatgggttgtagctagaaataagaattatttgtatttataaaattaCCCATTACAATGTGTGCTGTTATGCCTACACCTACCCCAAAGTTAAATTCAACCCTAACAGTTAAGCATGCGCATTACAATGCCCAATGTGACACTTGGATGAGTGCAGGGTTGCATGTCTACTGCTTGCTGCAGCGAGACCTACTTGAAGGTCCCCAAAGCCTGCAGGTGGACAATCTACAAACTGGGAAAGAAACAATAACAATCAAGCCCTACATTGCCTTAAAGCCCGAGTAATACTTTTGCCTTGCGACGCATCgtgcacctccgctgactgcTCATGCGCCTCACGAAacagacgaggcttttatacttgacgcgtttgccgttgtgatatttttttaaatgacagggggcagtcaaaagaaacccactgtAAAATCAGACAGATAACCATAAAAGTAGGAAGTTTCTGGAACTACgtcatattattatcatcattccaGATTTTTTAAGCACTTCTTTAATAAAGTATTTGAATGattgatttataaatatttcaccatttaagattttttttttaaatcgaacTGATGCATCACATGCTTTGGTTTATATCTCAGACAGTTTtgcctattaaagtttattaaaatattactgacAA

Function

GO:

id name namespace
GO:0042471 ear morphogenesis biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0008219 cell death biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7662 Acts upstream of or within inner ear morphogenesis and regulation of biosynthetic process. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm. Is expressed in several structures, including digestive system; heart tube; hematopoietic system; nervous system; and otic vesicle. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 5 and sensorineural hearing loss. Orthologous to human GSDME (gasdermin E).

Ensembl:

ensembl_id ENSDART00000059252

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021921 lncRNA upstream 282598 21141048 ~ 21142516 (+) True XLOC_009859
TCONS_00019662 lncRNA upstream 537690 20871044 ~ 20887424 (+) False XLOC_009850
TCONS_00019660 lncRNA upstream 544909 20871015 ~ 20880205 (+) False XLOC_009850
TCONS_00019663 lncRNA upstream 550614 20873723 ~ 20874500 (+) True XLOC_009850
TCONS_00021708 lncRNA upstream 729597 20688916 ~ 20695517 (+) True XLOC_009848
TCONS_00021922 lncRNA downstream 193161 21634387 ~ 21634836 (+) True XLOC_009862
TCONS_00019681 lncRNA downstream 257769 21698995 ~ 21703320 (+) False XLOC_009863
TCONS_00019683 lncRNA downstream 257863 21699089 ~ 21703817 (+) False XLOC_009863
TCONS_00019684 lncRNA downstream 257869 21699095 ~ 21703511 (+) False XLOC_009863
TCONS_00019690 lncRNA downstream 360493 21801719 ~ 21802475 (+) True XLOC_009864
TCONS_00019675 mRNA upstream 6339 21330634 ~ 21418775 (+) False XLOC_009860
TCONS_00019674 mRNA upstream 6339 21330634 ~ 21418775 (+) True XLOC_009860
TCONS_00019673 mRNA upstream 6459 21242491 ~ 21418655 (+) False XLOC_009860
TCONS_00019672 mRNA upstream 369978 21016820 ~ 21055136 (+) True XLOC_009858
TCONS_00019671 mRNA upstream 447408 20947439 ~ 20977706 (+) True XLOC_009857
TCONS_00019679 mRNA downstream 257754 21698980 ~ 21706709 (+) False XLOC_009863
TCONS_00019680 mRNA downstream 257758 21698984 ~ 21719111 (+) False XLOC_009863
TCONS_00019685 mRNA downstream 257986 21699212 ~ 21741877 (+) False XLOC_009863
TCONS_00019686 mRNA downstream 296968 21738194 ~ 21745336 (+) True XLOC_009863
TCONS_00019687 mRNA downstream 348477 21789703 ~ 21804638 (+) False XLOC_009864
TCONS_00019667 other upstream 511630 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 920249 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 1120839 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 1254286 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019642 other upstream 1720576 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019682 other downstream 257780 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019718 other downstream 1956575 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 2166005 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 2396694 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 2519645 23960871 ~ 23962929 (+) False XLOC_009898

Expression Profile

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