RNA id: TCONS_00019684


Basic Information

Item Value
RNA id TCONS_00019684
length 617
lncRNA type retained_intron
GC content 0.45
exon number 3
gene id XLOC_009863
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21698980 ~ 21745336 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTCATATCAAAACATCGATAAATGATCGCAGCTTTAACAAATAGCCAGTGCTATTCGAAGAACCCCTGCAGTTTGAATCCCATCGGCTCTGGGTTTGTGTTTACACTTCATTCAGATGGGGGAGGTCAGGAAACTCCAGAAGAAGTTAAGGCAAATTGAGAACTTGGAGATAAAAATCTCCCTcactccagaggaaaaaataaagGTCTCAAAGAAGGCGGAGCTTCGATCCAGATTGGCTGAGCTTCTGCTGCAGCTTTCTGGCCCCCAGCAAACTCAAGGGATTGTGGGAAAAGAGGAGGATAAAATGAAAAGACAAGTCGAGGAGGTCACAGAGCAACATGTTGGCCACCGTCCTGCGCTAAAGATTGCACGAGAGGAAAGACGTGAGAATGAAGCAAGCGATGGAAACCAGACAGATGGCAGAGGAGAAACGAATCTCCCCGTCAGCCTCACTGAAGAAGAACAAGAAGGTCAAATTAGCACAGTaatcacacacacaattacagttCCTCGCGCAGATGTTGATTATAAGCCTGCTTGTCTTTCACAGGAAGTTCTGCCTTATGGCTGTCTTGTGCAGCGATATAACAGATGGTTAGTTTATCTGCATTT

Function

GO:

id name namespace
GO:0051568 histone H3-K4 methylation biological_process
GO:0048188 Set1C/COMPASS complex cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1030 Predicted to enable histone binding activity. Predicted to be involved in histone H3-K4 methylation. Predicted to be part of Set1C/COMPASS complex.

Ensembl:

ensembl_id ENSDART00000167764

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021922 lncRNA upstream 64259 21634387 ~ 21634836 (+) True XLOC_009862
TCONS_00021921 lncRNA upstream 556579 21141048 ~ 21142516 (+) True XLOC_009859
TCONS_00019662 lncRNA upstream 811671 20871044 ~ 20887424 (+) False XLOC_009850
TCONS_00019660 lncRNA upstream 818890 20871015 ~ 20880205 (+) False XLOC_009850
TCONS_00019690 lncRNA downstream 98208 21801719 ~ 21802475 (+) True XLOC_009864
TCONS_00021709 lncRNA downstream 170884 21874395 ~ 21877421 (+) True XLOC_009866
TCONS_00019695 lncRNA downstream 318780 22022291 ~ 22097683 (+) False XLOC_009868
TCONS_00019694 lncRNA downstream 319022 22022533 ~ 22097384 (+) False XLOC_009868
TCONS_00021923 lncRNA downstream 319022 22022533 ~ 22113936 (+) True XLOC_009868
TCONS_00019676 mRNA upstream 257869 21425114 ~ 21441226 (+) False XLOC_009861
TCONS_00019678 mRNA upstream 258169 21426524 ~ 21440926 (+) True XLOC_009861
TCONS_00019677 mRNA upstream 269881 21425139 ~ 21429214 (+) False XLOC_009861
TCONS_00019675 mRNA upstream 280320 21330634 ~ 21418775 (+) False XLOC_009860
TCONS_00019674 mRNA upstream 280320 21330634 ~ 21418775 (+) True XLOC_009860
TCONS_00019686 mRNA downstream 34683 21738194 ~ 21745336 (+) True XLOC_009863
TCONS_00019687 mRNA downstream 86192 21789703 ~ 21804638 (+) False XLOC_009864
TCONS_00019688 mRNA downstream 87359 21790870 ~ 21804845 (+) False XLOC_009864
TCONS_00019689 mRNA downstream 97766 21801277 ~ 21805974 (+) False XLOC_009864
TCONS_00019691 mRNA downstream 163650 21867161 ~ 21867872 (+) True XLOC_009865
TCONS_00019667 other upstream 785611 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 1194230 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 1394820 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 1528267 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019642 other upstream 1994557 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019718 other downstream 1694290 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 1903720 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 2134409 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 2257360 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 2812581 24516092 ~ 24517092 (+) False XLOC_009904

Expression Profile

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