RNA id: TCONS_00019686


Basic Information

Item Value
RNA id TCONS_00019686
length 661
RNA type mRNA
GC content 0.58
exon number 5
gene id XLOC_009863
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21698980 ~ 21745336 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCACTTCCAGGCGCTCAGCCTCTCTCCCACTCCCTTCTTCAGTGGCACGAGagatGATCGGAGCGGCGAGGAGTCAGTGAACAGGCAGAAGCGATGGAGCGATGCTCCATCTCTCCCCACATTGGATTCATTCCCCTTTGGAGCTTCCTGCTGGTCACTGTCATTTTTTGCACTGCCACCGGTGACACAGATGACAGGAAGTGGGAGGAGTTGGCTGAAATGCAGATGCCAGTCACGGCGCAGGCCAGCACCACCCAGCTCTGGGCGGTGGACTGGGGTCCCACGCAGCCCCTGGAGGACGAGACCCATCATCTCATGTCCAGCCTGGAGACGGACAGTTTGAAGGCGACCACGTCCGAGGACTGGTCCCATCGTCGaaatgcgcctgtcaatcaaacaCAACGTCCGACTGCTGGAGAGAAAACGGAGACAGAGGAGCAGGACACAGAGGAAGTGGACCCACAGTTTTATGTGACGGTGACGATTTCATCTCTGCTGATTCTGTCCGCGGTCGTCATCTCAGCTAAACTCTGTTATGACCGCAGTCTCTCTCAGCGTCCCCCGCCGCTCTCTCTCGCCATCCCCCGACCCATCGCTCAGGAGGACAGCAGGCAGACTCTGCACAGCACTCCATCCTTCCCCGACAGAGAGAGGTAAACC

Function

GO:

id name namespace
GO:0051568 histone H3-K4 methylation biological_process
GO:0048188 Set1C/COMPASS complex cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000163688

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019683 lncRNA upstream 34377 21699089 ~ 21703817 (+) False XLOC_009863
TCONS_00019684 lncRNA upstream 34683 21699095 ~ 21703511 (+) False XLOC_009863
TCONS_00019681 lncRNA upstream 34874 21698995 ~ 21703320 (+) False XLOC_009863
TCONS_00021922 lncRNA upstream 103358 21634387 ~ 21634836 (+) True XLOC_009862
TCONS_00021921 lncRNA upstream 595678 21141048 ~ 21142516 (+) True XLOC_009859
TCONS_00019690 lncRNA downstream 56383 21801719 ~ 21802475 (+) True XLOC_009864
TCONS_00021709 lncRNA downstream 129059 21874395 ~ 21877421 (+) True XLOC_009866
TCONS_00019695 lncRNA downstream 276955 22022291 ~ 22097683 (+) False XLOC_009868
TCONS_00019694 lncRNA downstream 277197 22022533 ~ 22097384 (+) False XLOC_009868
TCONS_00021923 lncRNA downstream 277197 22022533 ~ 22113936 (+) True XLOC_009868
TCONS_00019680 mRNA upstream 19083 21698984 ~ 21719111 (+) False XLOC_009863
TCONS_00019679 mRNA upstream 31485 21698980 ~ 21706709 (+) False XLOC_009863
TCONS_00019676 mRNA upstream 296968 21425114 ~ 21441226 (+) False XLOC_009861
TCONS_00019678 mRNA upstream 297268 21426524 ~ 21440926 (+) True XLOC_009861
TCONS_00019677 mRNA upstream 308980 21425139 ~ 21429214 (+) False XLOC_009861
TCONS_00019687 mRNA downstream 44367 21789703 ~ 21804638 (+) False XLOC_009864
TCONS_00019688 mRNA downstream 45534 21790870 ~ 21804845 (+) False XLOC_009864
TCONS_00019689 mRNA downstream 55941 21801277 ~ 21805974 (+) False XLOC_009864
TCONS_00019691 mRNA downstream 121825 21867161 ~ 21867872 (+) True XLOC_009865
TCONS_00019692 mRNA downstream 172337 21917673 ~ 21938015 (+) False XLOC_009867
TCONS_00019682 other upstream 34515 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 824710 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 1233329 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 1433919 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 1567366 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019718 other downstream 1652465 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 1861895 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 2092584 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 2215535 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 2770756 24516092 ~ 24517092 (+) False XLOC_009904

Expression Profile

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