Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019687 |
| length | 596 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 5 |
| gene id | XLOC_009864 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 21789703 ~ 21805974 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060503-670 | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. |
| ensembl_id | ENSDART00000153617 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00019683 | lncRNA | upstream | 85886 | 21699089 ~ 21703817 (+) | False | XLOC_009863 |
| TCONS_00019684 | lncRNA | upstream | 86192 | 21699095 ~ 21703511 (+) | False | XLOC_009863 |
| TCONS_00019681 | lncRNA | upstream | 86383 | 21698995 ~ 21703320 (+) | False | XLOC_009863 |
| TCONS_00021922 | lncRNA | upstream | 154867 | 21634387 ~ 21634836 (+) | True | XLOC_009862 |
| TCONS_00021921 | lncRNA | upstream | 647187 | 21141048 ~ 21142516 (+) | True | XLOC_009859 |
| TCONS_00021709 | lncRNA | downstream | 69757 | 21874395 ~ 21877421 (+) | True | XLOC_009866 |
| TCONS_00019695 | lncRNA | downstream | 217653 | 22022291 ~ 22097683 (+) | False | XLOC_009868 |
| TCONS_00019694 | lncRNA | downstream | 217895 | 22022533 ~ 22097384 (+) | False | XLOC_009868 |
| TCONS_00021923 | lncRNA | downstream | 217895 | 22022533 ~ 22113936 (+) | True | XLOC_009868 |
| TCONS_00021924 | lncRNA | downstream | 519128 | 22323766 ~ 22327502 (+) | True | XLOC_009869 |
| TCONS_00019686 | mRNA | upstream | 44367 | 21738194 ~ 21745336 (+) | True | XLOC_009863 |
| TCONS_00019685 | mRNA | upstream | 47826 | 21699212 ~ 21741877 (+) | False | XLOC_009863 |
| TCONS_00019680 | mRNA | upstream | 70592 | 21698984 ~ 21719111 (+) | False | XLOC_009863 |
| TCONS_00019679 | mRNA | upstream | 82994 | 21698980 ~ 21706709 (+) | False | XLOC_009863 |
| TCONS_00019676 | mRNA | upstream | 348477 | 21425114 ~ 21441226 (+) | False | XLOC_009861 |
| TCONS_00019691 | mRNA | downstream | 62523 | 21867161 ~ 21867872 (+) | True | XLOC_009865 |
| TCONS_00019692 | mRNA | downstream | 113035 | 21917673 ~ 21938015 (+) | False | XLOC_009867 |
| TCONS_00019693 | mRNA | downstream | 113865 | 21918503 ~ 21938044 (+) | True | XLOC_009867 |
| TCONS_00019696 | mRNA | downstream | 540875 | 22345513 ~ 22361219 (+) | True | XLOC_009871 |
| TCONS_00019697 | mRNA | downstream | 783023 | 22587661 ~ 22603190 (+) | False | XLOC_009873 |
| TCONS_00019682 | other | upstream | 86024 | 21699006 ~ 21703679 (+) | False | XLOC_009863 |
| TCONS_00019667 | other | upstream | 876219 | 20913413 ~ 20913484 (+) | True | XLOC_009854 |
| TCONS_00019658 | other | upstream | 1284838 | 20496773 ~ 20504865 (+) | True | XLOC_009846 |
| TCONS_00019655 | other | upstream | 1485428 | 20296823 ~ 20304275 (+) | True | XLOC_009845 |
| TCONS_00019651 | other | upstream | 1618875 | 20167834 ~ 20170828 (+) | True | XLOC_009843 |
| TCONS_00019718 | other | downstream | 1593163 | 23397801 ~ 23399160 (+) | False | XLOC_009882 |
| TCONS_00019728 | other | downstream | 1802593 | 23607231 ~ 23607352 (+) | True | XLOC_009889 |
| TCONS_00019735 | other | downstream | 2033282 | 23837920 ~ 23854611 (+) | False | XLOC_009892 |
| TCONS_00019751 | other | downstream | 2156233 | 23960871 ~ 23962929 (+) | False | XLOC_009898 |
| TCONS_00019767 | other | downstream | 2711454 | 24516092 ~ 24517092 (+) | False | XLOC_009904 |
