RNA id: TCONS_00019690


Basic Information

Item Value
RNA id TCONS_00019690
length 557
lncRNA type retained_intron
GC content 0.36
exon number 2
gene id XLOC_009864
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21789703 ~ 21805974 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACTGATCAGAAGCTGGTGTGTGTCATCTGCAGGGATGGAGACAAACATAAAGGACACGTCTTTAAACCAGTGAAAGAAGCTGCAGAGATAAACAAGGGGAAGCTAAAGACTGCTTTGGGTTTTCTTGCCAAAGAAAATGGACAACTGGATTACATGATACAACAACAGACCACAGAGATCACCAAAACTGAGGTATCATAACATCTAAATAAGTTGGAAAACACTGACTTTCATGATAGCACAAGTCTTGgccaatgtattattttattttaaagtacattaaaaacacaattaatgcaTACACTGACTTGAATACTTTAGTTCAATGAGCATGTTTCAAATGTCtaaattgtaaattaatttgtttcatttactCAGCTCTTGTTTGACTAAAGTCCGGCTCAcactgtatgatttttaaaaattgtttatgaTTGTAGCTAGACTGCATGAACATGAtccccatgtcacactgtaagatgtcAGATGATATAATATTAGACTGACTGAcagcagacctggtgcagtgcaatctgagctgcatccaatgctttt

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-670 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000153660

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019683 lncRNA upstream 97902 21699089 ~ 21703817 (+) False XLOC_009863
TCONS_00019684 lncRNA upstream 98208 21699095 ~ 21703511 (+) False XLOC_009863
TCONS_00019681 lncRNA upstream 98399 21698995 ~ 21703320 (+) False XLOC_009863
TCONS_00021922 lncRNA upstream 166883 21634387 ~ 21634836 (+) True XLOC_009862
TCONS_00021921 lncRNA upstream 659203 21141048 ~ 21142516 (+) True XLOC_009859
TCONS_00021709 lncRNA downstream 71920 21874395 ~ 21877421 (+) True XLOC_009866
TCONS_00019695 lncRNA downstream 219816 22022291 ~ 22097683 (+) False XLOC_009868
TCONS_00019694 lncRNA downstream 220058 22022533 ~ 22097384 (+) False XLOC_009868
TCONS_00021923 lncRNA downstream 220058 22022533 ~ 22113936 (+) True XLOC_009868
TCONS_00021924 lncRNA downstream 521291 22323766 ~ 22327502 (+) True XLOC_009869
TCONS_00019686 mRNA upstream 56383 21738194 ~ 21745336 (+) True XLOC_009863
TCONS_00019685 mRNA upstream 59842 21699212 ~ 21741877 (+) False XLOC_009863
TCONS_00019680 mRNA upstream 82608 21698984 ~ 21719111 (+) False XLOC_009863
TCONS_00019679 mRNA upstream 95010 21698980 ~ 21706709 (+) False XLOC_009863
TCONS_00019676 mRNA upstream 360493 21425114 ~ 21441226 (+) False XLOC_009861
TCONS_00019691 mRNA downstream 64686 21867161 ~ 21867872 (+) True XLOC_009865
TCONS_00019692 mRNA downstream 115198 21917673 ~ 21938015 (+) False XLOC_009867
TCONS_00019693 mRNA downstream 116028 21918503 ~ 21938044 (+) True XLOC_009867
TCONS_00019696 mRNA downstream 543038 22345513 ~ 22361219 (+) True XLOC_009871
TCONS_00019697 mRNA downstream 785186 22587661 ~ 22603190 (+) False XLOC_009873
TCONS_00019682 other upstream 98040 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 888235 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 1296854 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 1497444 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 1630891 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019718 other downstream 1595326 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 1804756 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 2035445 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 2158396 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 2713617 24516092 ~ 24517092 (+) False XLOC_009904