RNA id: TCONS_00019691


Basic Information

Item Value
RNA id TCONS_00019691
length 627
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_009865
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21867161 ~ 21867872 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTACCAGTGCAGCAGAAGACACTCATGTGTTCTTCAGTTCTGGTGAAAATGTCCGTCTGCCCTGTAATAATGCTCTTTCTGGCTGCACATCAACTACATGGAACTACAACAGACATTCAAAAACGGTTGAACTGGTTGCTGGAGGGTCACTGAAGACAGACATAGAGAGACGTGAGAGACTGAGTCTGGGATCTGACTGCTCTCTGAACATCAAGAAAGCCACAAAAGAAGATTATGGATCTTACATCTGCCAACAATATGTGAATGAACAACAATATGGACCTGATGCACGTGTTTATCTGCAGGCTCTTGATGtcTCTTCATCACTCTCTCAGACTGAGATCAGAGCAGGCAGATCTGTGACTCTCTACTGTCAGCTGGATCTTTATGCATCCACTTGTGGTGATTTGGTAAATTATGAAGGATATCAGCTGATGTGGGTGAATCAGGCTGGTAAGAATCTGATGACAGACTCCAGATATCAGATATCGGATGTCTTCTCAAGTCGCTGTATGATAACGCTGACAACAACACTCTTAAAGGAAGATCACAACAGAGAATGGAGATGTCAGCTTACTCAGAGAAATCAACTAAAGACCTCAGCCTCATTCACTGTCAAGTACTCA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-611 No description available

Ensembl:

ensembl_id ENSDART00000060424

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019690 lncRNA upstream 64686 21801719 ~ 21802475 (+) True XLOC_009864
TCONS_00019683 lncRNA upstream 163344 21699089 ~ 21703817 (+) False XLOC_009863
TCONS_00019684 lncRNA upstream 163650 21699095 ~ 21703511 (+) False XLOC_009863
TCONS_00019681 lncRNA upstream 163841 21698995 ~ 21703320 (+) False XLOC_009863
TCONS_00021922 lncRNA upstream 232325 21634387 ~ 21634836 (+) True XLOC_009862
TCONS_00021709 lncRNA downstream 6523 21874395 ~ 21877421 (+) True XLOC_009866
TCONS_00019695 lncRNA downstream 154419 22022291 ~ 22097683 (+) False XLOC_009868
TCONS_00019694 lncRNA downstream 154661 22022533 ~ 22097384 (+) False XLOC_009868
TCONS_00021923 lncRNA downstream 154661 22022533 ~ 22113936 (+) True XLOC_009868
TCONS_00021924 lncRNA downstream 455894 22323766 ~ 22327502 (+) True XLOC_009869
TCONS_00019689 mRNA upstream 61187 21801277 ~ 21805974 (+) False XLOC_009864
TCONS_00019688 mRNA upstream 62316 21790870 ~ 21804845 (+) False XLOC_009864
TCONS_00019687 mRNA upstream 62523 21789703 ~ 21804638 (+) False XLOC_009864
TCONS_00019686 mRNA upstream 121825 21738194 ~ 21745336 (+) True XLOC_009863
TCONS_00019685 mRNA upstream 125284 21699212 ~ 21741877 (+) False XLOC_009863
TCONS_00019692 mRNA downstream 49801 21917673 ~ 21938015 (+) False XLOC_009867
TCONS_00019693 mRNA downstream 50631 21918503 ~ 21938044 (+) True XLOC_009867
TCONS_00019696 mRNA downstream 477641 22345513 ~ 22361219 (+) True XLOC_009871
TCONS_00019697 mRNA downstream 719789 22587661 ~ 22603190 (+) False XLOC_009873
TCONS_00019698 mRNA downstream 719861 22587733 ~ 22603354 (+) True XLOC_009873
TCONS_00019682 other upstream 163482 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 953677 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 1362296 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 1562886 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 1696333 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019718 other downstream 1529929 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 1739359 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 1970048 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 2092999 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 2648220 24516092 ~ 24517092 (+) False XLOC_009904

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_03921124_03930996.mRNA False 2363 mRNA 0.36 9 CI01000016 3920055 ~ 3931162 (-)