RNA id: TCONS_00019693


Basic Information

Item Value
RNA id TCONS_00019693
length 3824
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_009867
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21917673 ~ 21938044 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTCCAGAGAGTAGACGAGAACATTTGGCCAGGTATTTGTCATCCATGTGGGAATGGGGGATATGAAGACCCCAGATTTCGATGATCTGCTTGCAGCATTTGATATTCCAGACATTGATGCCAAAGAAGCAATTCAGTCTGACACTCATGGCAATCATAATGAACACAGTAGTGTAGTTGGAAAGGAGAGAAGTGGAAGTCCTTCCCTAAGACCTTCAGGAAGTCCTGATCCTCCTCACAATGACCCTTCCGTGGTCAGCGTGATTGTAAAAAACAGTGTACATTCAGATGACAAAGCCGAAGGGAATGAAACTGGGGAGTTTTCTAGTGCAGATGAATCACAAAAGTCTCCCCAGAAAGGTCCCAGTAAAGATAGCTCAGTGCCTACTGATCCATTTATCTATAATGGACTCAAAAGCGTCTCAGATGGGTCTACAGAATCCCCCCCATCACTAGATCTAGCACCAGGGCAGCATAATGGCCCCCTTTGGTCTCTTTCTGCCTCTAAAGCTACTGGTGATGATGACAAACATAATGACGCTTTTACTAATCACCCTGCCAGCACTTTTCAGTCTTTACCTCTGAGTAATCACCCCAGCGTATCTTCACATTTAATTAGTCCAAACTTTTCTTCCAAAGTTGATTCTGAGGAAGCACAAGcaataaatggcactttaagGGCAGGAGTTCGTCGGCACCAGTCTGAAGATGAAGAATCTGAACCAGACCTTGGCAGTCCTGCTCTTGTCATACAAGAGAGCCCCATTTCCCAGCTGTGCCCTGCTCCCAAGGTCCCACGCATGCAGCGGTCCCCTTCAAGTGTGTTTCAACCGCCTTCTCCCTCATCGCCTTCCTTACCTGTCAGTAACACCCAAATGGAGGAACCCTCTGTACAGCATCCAAAACTACACAGCAGCACCAACCCAACATCTCTGACCTCCACAAATAATCTACCAGTTGAAGAAAAAGATCTGGAGCATATAATTGAGGAGAGAGATTCTCCTGAGAGCCCTGAGCCAGAAATCTCTCAATCTCGTACATCTCTTCCCTCAAATTCACAAGGAGCCATTGAGTCAAAACAGAGGATAACAAGAGAAGAAGCCCCTCAAGATGAAGTTATGGACGTGAGCATGCAGGAGAAGGTGGATTATGGAGCTGAGGCGACAGAAGGGAAATCTACTGAGCCTACTTTGGTGGAATCGGCCTCTGATGCAATCTCCAACTCGGCTTCTTCCAAGCCTCTCAAAATGAGAATCAAGACTGTCAAGAAACCAGTTGTAAGCATTACACGCACTGTATCTAAGGCTGCTACCAAAGGTGGAGCCTCTAAGGGTTCTGGTGCCTCTAAAGTTCAAGCAGTAGCCCGTAAGTCACTGCAGAAGATTCCGAGATCTGTTGCTTCTCCTCAACTGCTATCTCAGAGTACAAAGGTCGCGATGTTGCCCGTGTCCACCCTTCAGGATGCCAGCACGGCTATGTTGTTTGCAGCCAGCAGGGCACAGAATCAAATGCCCACTGCTCTTTCGGCCACTGCAGTCAACATCACCAGAACATCAAACCTCCCTTCCATCTCTTCCTCATCCATTCCTGGAGTTAACGTTCGCGCTGCTTCAGGCCAGAAAACAAACACTGGAACAGCTAAACCAGCCTCAATTGTGAACAGTCCAGGAGCTGTGATCTCACGCAGCCAATCTAGCCTTGTTGAGGCTTTTAACAAAATCCTGAACAGTAAGAATCCACTGCCAAGTTACCAGCCAGACCTCACCTCTCTGCCACCCCCAGAATGGGGTCTTCGATTGCCCTCTACCGGATACCGTTGTCTCGAGTGCGGAGATGCATTTGCTTTAGAGCGCAGCTTGGCGAGACACTACGATCGACGCTCTATGAGGATTGAGGTGACCTGTAACCACTGCTCCAAACGGCTGGCTTTCTTCAATAAGTGCAGCCTGCTGCTCCATGCACGAGAACACAAGGAGAAGGGGCTGGTCATGCAGTGTTCTCATCTTGTCATGAGTCCTGTCAGTGTGGAGCAGATGATTGGCCAGCAGGATACTGTGCCTATAGGTGTGCTCTCTCCAGCCGTCTCTGCTCTGTCTGCCATTAAAGAAAGTGGTGTCAATTTGTCACAATCGTCTGATCACAGCTGTCCAGAGTGTTGGAGTACATTCAAAGGGAAGCAAGAATTGGTAGCACACTTCCAAGAAGTGGAGCCTGGCGGCACTGACACgtgctGTCTGCAGTGTTCTCCACCAATGCCACTCTGGAACTCGTGCTGTGCTGCAGCTCACCGTCGGATGCACCAGCAGCTCCCTCCTCTCGTGTGCCCTGAATGTGGACTCATCTGTCAGACTCATGAGCTCAACACTCACCTCAAACAAACCTGCCTGCACTACTCACGCCGCCTTGGATACAAATGTGCCTGTTGTCATTTGGTGTTTGGAGGAGTGAATAGTCAGAATGCGGTAAAGACGCACATGCAGACGGCTCACTGTGAGATCTTTCATAAATGTCCCTCCTGCCCAATGGCTTTCAAATCTTCTTCTGGTGCTGAAAGCCACTGCGCATCCCAGCATCCTGAGCTGTCTGAAAGTGCGAGACAGTCCAAggaGATCTATAAATGTGTGATGTGTCGGACTGTTTTCACCCAAAAATCATTGCTCAGTGTCCATATTGACACTCACTTAACCAAGCAGAAAATGCATGTCTTTAAGTGCCCAGACTGTAACAAGCTGTTTACGCAGAGAACTTCCCTCCTTGAACACGTTAAGGATACACACAGGGAGACAAGCAACCATGACGGCACGTCAACACAGAACAGCTTGGTAAAGATGGAGAGCTCTGATGGGGAGGAGTGGGGACGTGATGAAGAAGAGGACAAAGGGAAAGTGTCGGATGCAAACTCTGCTGTCCCACGTAGCCAGAGCTGGAGCTGCTCACAGTGCCAGACGCACTACACCGACAAAGAGAATTACATCAGTCATATGACTGAGCAGCACGGCAAGGAACTGAAGAAATTTCCGTGCACTCTTTGTGAAGGCTCCTTCTCTTCATCCTCAAGTTTAAGACGCCACATTCGTGTCAAACACAAAGGCATTAAAAGAGTGTTTTATTGCCAGCTTTGTACAGGTGAGAAGAGGAGCTTTAGCAGTAAGCTGATTCTGGAGAAACACATTCAGGCTCAGCATGCAGGAGAGAGAGGAACCGCCACACAGAGTCAGGCAGTTCCTCAATTCACAGATGGAGCTGACAGCTCTTCTGAACATGATGCTGGCGTTCTGGGCGGGTCGTCGGTGGAACCCGAAAGCCGATTGGCTGAGAGCACACTGACACGCCGCATTAAAGGAGCTCCAGTCGGGGAGCAGGAAGCCAAAGGATTGCGTTGCATGCCATGTGGCTTCACCACAGAGGACCGAGAGGAATTTCTCCAGCACATCGTCTGTCATCGTGACGGAGGAAGCGGCGCTCAGTGTCAGCAGTGCGGAGCATGTTTTGCATCTTCCTCTTCCCTCAGCAGGCATCTCTTCATCAGTCATCGAGTGCGGGATTCTCCTTCTGATCACGCTGAAGCAGCTCTGCACACCTGTGCCACTTCTGTGGCCTCTGACTCTGCGGCCGCAGGAGGCTCTCCAGGGTCTCCGCTGAGTGTTGTTGGGGGACTACTGGAGGACGGTGAAGGTAAGCACATCTGTAAGGTGTGTGGACGTTACTTTAGCAAACCTGCTGATCTTAATACGCACTTCAGAACTCACGGCATGGCCTTCATCACTGCGTACAAAACAGACAAACCAGCATAGAAAGAGAGAGTGATGTGAATAAATTAACT

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-32 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Is expressed in several structures, including liver; opercular flap; pleuroperitoneal region; scale; and vertebra. Human ortholog(s) of this gene implicated in Paget's disease of bone. Orthologous to human ZNF687 (zinc finger protein 687).

Ensembl:

ensembl_id ENSDART00000167919

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021709 lncRNA upstream 41082 21874395 ~ 21877421 (+) True XLOC_009866
TCONS_00019690 lncRNA upstream 116028 21801719 ~ 21802475 (+) True XLOC_009864
TCONS_00019683 lncRNA upstream 214686 21699089 ~ 21703817 (+) False XLOC_009863
TCONS_00019684 lncRNA upstream 214992 21699095 ~ 21703511 (+) False XLOC_009863
TCONS_00019681 lncRNA upstream 215183 21698995 ~ 21703320 (+) False XLOC_009863
TCONS_00019695 lncRNA downstream 84247 22022291 ~ 22097683 (+) False XLOC_009868
TCONS_00019694 lncRNA downstream 84489 22022533 ~ 22097384 (+) False XLOC_009868
TCONS_00021923 lncRNA downstream 84489 22022533 ~ 22113936 (+) True XLOC_009868
TCONS_00021924 lncRNA downstream 385722 22323766 ~ 22327502 (+) True XLOC_009869
TCONS_00021925 lncRNA downstream 389926 22327970 ~ 22329028 (+) True XLOC_009870
TCONS_00019691 mRNA upstream 50631 21867161 ~ 21867872 (+) True XLOC_009865
TCONS_00019689 mRNA upstream 112529 21801277 ~ 21805974 (+) False XLOC_009864
TCONS_00019688 mRNA upstream 113658 21790870 ~ 21804845 (+) False XLOC_009864
TCONS_00019687 mRNA upstream 113865 21789703 ~ 21804638 (+) False XLOC_009864
TCONS_00019686 mRNA upstream 173167 21738194 ~ 21745336 (+) True XLOC_009863
TCONS_00019696 mRNA downstream 407469 22345513 ~ 22361219 (+) True XLOC_009871
TCONS_00019697 mRNA downstream 649617 22587661 ~ 22603190 (+) False XLOC_009873
TCONS_00019698 mRNA downstream 649689 22587733 ~ 22603354 (+) True XLOC_009873
TCONS_00019700 mRNA downstream 680576 22618620 ~ 22678294 (+) False XLOC_009874
TCONS_00019699 mRNA downstream 680576 22618620 ~ 22678294 (+) False XLOC_009874
TCONS_00019682 other upstream 214824 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 1005019 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 1413638 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 1614228 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 1747675 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019718 other downstream 1459757 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 1669187 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 1899876 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 2022827 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 2578048 24516092 ~ 24517092 (+) False XLOC_009904

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_03834829_03843163.mRNA True 4143 mRNA 0.47 9 CI01000016 3834500 ~ 3843266 (-)
bowfin (Amia calva) AMCG00012414 True 4644 mRNA 0.69 10 CM030138.1 17767410 ~ 17779122 (-)