RNA id: TCONS_00019695



Basic Information


Item Value
RNA id TCONS_00019695
length 1091
lncRNA type antisense_over
GC content 0.41
exon number 4
gene id XLOC_009868
representative False

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22022291 ~ 22113936 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AGTGCAAGCCATGTTACTTATCAAACGCATTTTCGTTACGGAATTCcaatagaaaacattttacaatctTACCTTTTCCCTCGATCACACTAAACCACTGGGACAAAACGAAAAACATTCGAGCGATCTGTTTCATCTTGGTTGTTTCCTCTGCAGCCACACATTGAATGACTGcccgctcgctcgctcgctctctctctctctctctctctctctctctctctctcacttccgGTGTGAGTGTTTGGGCACGAGAGGACGGGTGTGTGGGAGTGTGCATGCTATGACTGCAGAGCTGGACTTTGAGGCCTGGCTTGAGCTTGAATTTCACCCTCTATGCAACTGCTGAATAAGACAAGCCTGCAAATGGACATGCACAAGAAACAAGAAGAAATCATGTTTATTTCATCTATATTCTGCACTATGGATCTGTATTCTGTTTGCATAACGAAAACTGTGGACTGTAATTGTCTGAAAATGAATGGCAGCTtgGCACCATTCAAGTCATTCAAAAGCAGCAGAAGCTTGACTAATCCTACAGTGGATTCTACCATTATGTTTTTTCTCAACCAAGAAGTCAAGGGCCGGGCTGGTGCACTGCTCCCAGAGTTAGTTAAGTGCTAAACTAAAAGTGCTTGACAACACTACAGGGAGCTGCAAATCTACAAGCCCAAAatgagaagaaaaacaaatatattttctgaACTATGgattactattatttttgtatGGAGAAGAAGTCATGATCGGAGCATGGTAGGAAAATTTTCATTTCAATAAACATTTCTCTTGGAATATCTCTGTTAGCATTCTACTGCTCAGTTTCACACCTAAAATCATGGCTGCGTCACTCTCTGGCCGATTGAGTGAGCCTTGGCATCATGTCAGATTGTAAGAGTACAGTGGGCAGAATGATGACCTTTGGACTTTTCAAACAACTGCAATTCTGTTTCAGTGCTACGCTTGAAGCCCTAAATATAAAAGTCTTGTTTAAAAATACCAACTAAAAATACTAACTTAACAGTAGAAAACCTGAAATATGTTGTTGCACTGAATGAATCAGATTAAATGAAACCCCAACCTCCTCTTTT

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00021709 lncRNA upstream 144870 21874395 ~ 21877421 (+) True XLOC_009866
TCONS_00019690 lncRNA upstream 219816 21801719 ~ 21802475 (+) True XLOC_009864
TCONS_00019683 lncRNA upstream 318474 21699089 ~ 21703817 (+) False XLOC_009863
TCONS_00019684 lncRNA upstream 318780 21699095 ~ 21703511 (+) False XLOC_009863
TCONS_00019681 lncRNA upstream 318971 21698995 ~ 21703320 (+) False XLOC_009863
TCONS_00021924 lncRNA downstream 226083 22323766 ~ 22327502 (+) True XLOC_009869
TCONS_00021925 lncRNA downstream 230287 22327970 ~ 22329028 (+) True XLOC_009870
TCONS_00021926 lncRNA downstream 477460 22575143 ~ 22577154 (+) False XLOC_009872
TCONS_00021710 lncRNA downstream 477672 22575355 ~ 22579326 (+) True XLOC_009872
TCONS_00021927 lncRNA downstream 552180 22649863 ~ 22655087 (+) False XLOC_009874
TCONS_00019693 mRNA upstream 84247 21918503 ~ 21938044 (+) True XLOC_009867
TCONS_00019692 mRNA upstream 84276 21917673 ~ 21938015 (+) False XLOC_009867
TCONS_00019691 mRNA upstream 154419 21867161 ~ 21867872 (+) True XLOC_009865
TCONS_00019689 mRNA upstream 216317 21801277 ~ 21805974 (+) False XLOC_009864
TCONS_00019688 mRNA upstream 217446 21790870 ~ 21804845 (+) False XLOC_009864
TCONS_00019696 mRNA downstream 247830 22345513 ~ 22361219 (+) True XLOC_009871
TCONS_00019697 mRNA downstream 489978 22587661 ~ 22603190 (+) False XLOC_009873
TCONS_00019698 mRNA downstream 490050 22587733 ~ 22603354 (+) True XLOC_009873
TCONS_00019700 mRNA downstream 520937 22618620 ~ 22678294 (+) False XLOC_009874
TCONS_00019699 mRNA downstream 520937 22618620 ~ 22678294 (+) False XLOC_009874
TCONS_00019682 other upstream 318612 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 1108807 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 1517426 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 1718016 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 1851463 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019718 other downstream 1300118 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 1509548 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 1740237 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 1863188 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 2418409 24516092 ~ 24517092 (+) False XLOC_009904

Expression Profile


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