RNA id: TCONS_00021924


Basic Information

Item Value
RNA id TCONS_00021924
length 3556
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id XLOC_009869
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22323766 ~ 22327502 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAACTAGTGCGACCTGCATTAAGTGTCTGGCCTTCGCTGACATTAGCGGTATGTAAAGATCtttataaaagtataattttaGATTATTGTATTTGGTTGTATTTTATGTAGATTTTACTATTTCGTTCAGATTATTTGATTAGAGTTTTCTACGTACTTTATCGCTTAGGCTGTAAAATTGACTTAATGTTGGTTGGAATTGCAGATTGCTATATTGTCGACTTGTTTTCAATGGGTATATACGGTGGCGTAGTGCAAAATGCGGCTGTATTGTATGTATGCTGTCAgctttaacacaatatatttcaaattactgttgtattatttatttatcatttgtgCTGTCGGCCTGTTCAATTTGCAgctttttattataaattgttcTACTTACAGTTTCAGTAATTACTATAACACATTTATCTGTTCTAAATTTATAGATTGTCATCTTGTATAGCggcaaaatattatttgttagtgTTAGAACAGAACCAGACTGAAGACAATGGTAGATAAAACTTCCAAAGAATGGTAATAAGATTCATTAATAACTTGAAatctttctattgtattttacagATTGGAATGGACCACATGGAGAGAAAAAggggaatcacacacctcagcaaagACTGgaaatttaatttctttaaaaaaactggTGGACGGGTGCATCGATGGACATCCTGCCAAGATGAAAAGGGTGGTTGgtatagatcagtggttctcaaatttttttacCTCAGCAAGACTTTGtgtctccaagtaccaccttaatATAGTGGCGTAGTAAGCCTAATTAatcagctacagctctgcacagttcaaaaacaaggcagATTTATTCATGACAATAATGTCAAtcactttaaatattataaataatatgaacattaacactgtatttTGCTCACTTTTAAATAGAATGGCGTTTAAAACTTAATTAATGTAATCTATCATTTtcgtaaaaagaaaaaaaaataatcatatgcTGTACTTAAAAGTCATGTATTCGCCTATATAGTAGCctatattcatcaaaacctggaaatatacagtagcttagatcttttataaatttatatgtcatcatattcatattatatataaactatttttgatacattttgagatgtagcatgtacatatatGACATACTTTTATGGTGGAGACTAGAGAGGGATAGTTGTACCTCGAATACATTTCTCTATAAATCTTTGAGATCTTGAGTTACAACTGTGTGCAATTAAATAGCATGTAAGTTATTTTTGCAGAACAAACAGAAATCTGAGCACTCtttagtttcaaacaggaggAGTGCAGTGTTACAATTCACTCCACAGTCGGGAATAGTTGTAACACACCCTGTGGTGAGATGTTAATTATGATTTCCACCGGGGTGAGatgtaacattataaaataagaattatGGCCAAAAAATGCATTTGAAAGCTTATTAATCATCATTGAGCTTTcagcattatgtgtgtgtgtctgtgttaacaaagctgaataaaatatgcaaatgtgcATCCGCTTCAACAATTAAACTctaattgtgtgtgtgcgcacagaaGTCAAACACTGAGCTCAAACTACTTTGACTTTTTCTTTCAAGAGTTGTAGaaatactgaaattaaattatataaatacagttttaaatctgCTTGGGTTTGGTGGAAACATTTCACAGATATTTCTAGCAAAGGTTTTGTTGTTACAACTGACCCAGCGTTATGTGGTCATCAATCTGTTCTCCTTACAGCTaacagctaaaacattatcaccaacaatgtggattaaatatgtccacacacagacacacaaattaCTTGGGTTTATTACAAATCAGGCattgcttttataaaaaaaactattgtagtaaaaaaaatatcactTTCTTAGCTCAAATGTAGTTTTTCCTGTCTAATATCTGCTGTCTTTCACAGGACTGTACTGTTTCATATGTGGTATGAGGACTAATGTGAACATGTGTGAAGTGAATCAACTGATTTGTAACTAGTTCCTGGTTTTAGAGATTTGGAAGTGTTACAACTATCCCCGGCCTCCccttgaaatctaaacattaacttgtattttaaatatatgattgacaattgcatatttaaattagagTTTAGATGTGCttacagagaaaaacagaaaTTATAAATACACTGTTTGACCAATTTTATACGTGATTTATCTGGTCATATGGGCAGCATTTCCATGATTTGGTGGAATCAAAATAATATCTTAAGTAAACTGCATAGTTTGCGTAAACTGTGCACCCGACCACAGTTTTCAGGCCGACTTGGGTAAGGTTCGCGGGTATGCCGCCTATACACACAAAGCCTAACATTAACTTTTGTGTTTCTCCAAGCTTCAAAAATGGCTAATTTGCTTGAGTCTATGTTCTGCACCATTTAAATCACATCCAGATTCATTTAAATCTGAggtaataaactaaattgaaagTCACATAGCTACAAAACAAATGACTTTAGGTTATAAAGTATATCGGAAACACGCATTATGTTACACAACTACGAACACACGTTAACACgtttgttataattatttatcaATGATGCAGTATAGGGAAATTCCTGAGTTTGCAGTAACTGTAATGCCAACAGGACTGGTCTGCAAAAGCACTCTAGTGCGTATCTTCCTGAGAGTTCCACAATTTTTTAGATTGTTAGCATGTGATGATAGAGTACAGGGAATGGCTAATGCTTATCAGATCAGTGTTATCGTACTCGTCAAAGAGTTAAAGTgtgttcatatattttttaaaggattATTCAGTGATTCcttcgcgtaccactagaaggaaccCGATGTACCACATTTTGAGAATCACTGGTATAAATAGTTAGATTGGCCTGTGTTTTTCAGCAAATGAAGAGCATGCAGAAGATGGAGACTCACTAGAGCATTGCAGCAGGTATTGCTTTGTTGgtgttgtttttgtcttttgcaggttggagtggagcagaagaagAAGACTCACAAGGGGAATGGTGGAGATATACTTGAGGACCCGAAGCTCAGGAAGCAGATTGGTGTGGACCATGTGGAGAAACAGGGAAACACCTCAGTAATGatgGTGTCTCCTAAGAGACTGGATTTAGGTGGACATTTAAACAATGTTATTATACTGGATGGCAGGTGAGTATAAGCAGGTGAGTTTTGATGCCGATGATAACATCGTAATGAACATAAACTGGATATTTGACTGTGCAGGCTTGGAGACTGGTGACGAATACCACAGATGGCGAACAGGATGAAGACCGGATGAGGAACTAGGAGACACCACCCTAGGAGAGACACGGTAGATACTGGAGATCACaggattattatttataatattatttgtaGTTTATGTTGTCAGCCTGTTCAGCATTTGCAgctttttgttgttatttgttttatttacagtttcaCTAATTATTGAAACACATTTTCTACTCTAAGTTTAGGGTTTGTCATCTTGTAGTAGAGTATTTACGTAGAGCAGcaaattattatttgtgtgtgtgttttaacaaaG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021923 lncRNA upstream 209830 22022533 ~ 22113936 (+) True XLOC_009868
TCONS_00019695 lncRNA upstream 226083 22022291 ~ 22097683 (+) False XLOC_009868
TCONS_00019694 lncRNA upstream 226382 22022533 ~ 22097384 (+) False XLOC_009868
TCONS_00021709 lncRNA upstream 446345 21874395 ~ 21877421 (+) True XLOC_009866
TCONS_00019690 lncRNA upstream 521291 21801719 ~ 21802475 (+) True XLOC_009864
TCONS_00021925 lncRNA downstream 468 22327970 ~ 22329028 (+) True XLOC_009870
TCONS_00021926 lncRNA downstream 247641 22575143 ~ 22577154 (+) False XLOC_009872
TCONS_00021710 lncRNA downstream 247853 22575355 ~ 22579326 (+) True XLOC_009872
TCONS_00021927 lncRNA downstream 322361 22649863 ~ 22655087 (+) False XLOC_009874
TCONS_00021928 lncRNA downstream 367724 22695226 ~ 22696496 (+) True XLOC_009875
TCONS_00019693 mRNA upstream 385722 21918503 ~ 21938044 (+) True XLOC_009867
TCONS_00019692 mRNA upstream 385751 21917673 ~ 21938015 (+) False XLOC_009867
TCONS_00019691 mRNA upstream 455894 21867161 ~ 21867872 (+) True XLOC_009865
TCONS_00019689 mRNA upstream 517792 21801277 ~ 21805974 (+) False XLOC_009864
TCONS_00019688 mRNA upstream 518921 21790870 ~ 21804845 (+) False XLOC_009864
TCONS_00019696 mRNA downstream 18011 22345513 ~ 22361219 (+) True XLOC_009871
TCONS_00019697 mRNA downstream 260159 22587661 ~ 22603190 (+) False XLOC_009873
TCONS_00019698 mRNA downstream 260231 22587733 ~ 22603354 (+) True XLOC_009873
TCONS_00019700 mRNA downstream 291118 22618620 ~ 22678294 (+) False XLOC_009874
TCONS_00019699 mRNA downstream 291118 22618620 ~ 22678294 (+) False XLOC_009874
TCONS_00019682 other upstream 620087 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 1410282 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 1818901 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 2019491 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 2152938 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019718 other downstream 1070299 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 1279729 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 1510418 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 1633369 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 2188590 24516092 ~ 24517092 (+) False XLOC_009904

Expression Profile

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