RNA id: TCONS_00019696



Basic Information


Item Value
RNA id TCONS_00019696
length 982
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_009871
representative True

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22345513 ~ 22361219 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AAAACACCCGACGAAGAGACCACAGGCGAGATGTCAACAAAAAAACTCTCCCGAAAATGCCTCTGTCAACCTGAATAAGAACCAGCCTAATTTTACAATTCATCAACAGTAACGAGCAGTAACGTTAGcttctttttattacatttaaaaaaaagccacACAATGGGAACGCATCTTTCGGGAGTAAATGTTGTTCTTGTTATGACCTACGGCTGCCTGGTGTTTGTGCTGCTGTTCATTTTTATGAAAAGGCAGATTATGCGCTTCGCTATGAAGTCTCGCAGAGGACCACATGTCCCGCTGGGTCACAATGCACCAAAGGACCTGAGAGAAGAGATCGATTTGTGTTTGTCTAAAGTGAATGACGTTCGCTATGAACCAAGTCTGCTCTCAAAAGATGACGACCGACTGAGGCATCAGGGCCAAATTGgTTGTTATAATTATCTCTACAGAATGCAAACTTTAGATGCCATCAGAGACTCTGATCTTCCGGTTCTGGACATGTCTCGCAGTGCGAGTGCTCTGACGGGCCGCCAGTACAAGAAGTGGCTGATGGATCTGCGAATCTCTCACTCTCTGGTCAAGTTCAATCATAGTGCACTTCTGGATCGCTTGCTGGAGGGTTATGACAATGCTCGACACGGCACTGGGGTGTTTGGTGAAGCAGAGTTTGTGAAGTATAAACAAGATCTGACTGAACTGGCTGCTCTTGTGAAGAGTCACTCCAACAGCAGCAGTCTGAACCAGCAGCACCAGTCAGCAGCCAAAGACCTGACCAGCTCTCCCGGCCCATCGTCCACCTCCACCATCCAGGTCACCTACCTGCCGTCCAGCGGTCAGCGCAGCAAGAGGCCCAAACACTTTCTAGAGCTCAAGAACTTCAAAGACAACTACAACACACTGGAGAGCACGCTGTAGGACACTGGGTGAGTAAATCTTGACTGAAAAATCATCATCCACACAGTGGGAGATGCTGAAAAAA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000078000

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00021925 lncRNA upstream 16485 22327970 ~ 22329028 (+) True XLOC_009870
TCONS_00021924 lncRNA upstream 18011 22323766 ~ 22327502 (+) True XLOC_009869
TCONS_00021923 lncRNA upstream 231577 22022533 ~ 22113936 (+) True XLOC_009868
TCONS_00019695 lncRNA upstream 247830 22022291 ~ 22097683 (+) False XLOC_009868
TCONS_00019694 lncRNA upstream 248129 22022533 ~ 22097384 (+) False XLOC_009868
TCONS_00021926 lncRNA downstream 213924 22575143 ~ 22577154 (+) False XLOC_009872
TCONS_00021710 lncRNA downstream 214136 22575355 ~ 22579326 (+) True XLOC_009872
TCONS_00021927 lncRNA downstream 288644 22649863 ~ 22655087 (+) False XLOC_009874
TCONS_00021928 lncRNA downstream 334007 22695226 ~ 22696496 (+) True XLOC_009875
TCONS_00019708 lncRNA downstream 511641 22872860 ~ 22876095 (+) True XLOC_009877
TCONS_00019693 mRNA upstream 407469 21918503 ~ 21938044 (+) True XLOC_009867
TCONS_00019692 mRNA upstream 407498 21917673 ~ 21938015 (+) False XLOC_009867
TCONS_00019691 mRNA upstream 477641 21867161 ~ 21867872 (+) True XLOC_009865
TCONS_00019689 mRNA upstream 539539 21801277 ~ 21805974 (+) False XLOC_009864
TCONS_00019688 mRNA upstream 540668 21790870 ~ 21804845 (+) False XLOC_009864
TCONS_00019697 mRNA downstream 226442 22587661 ~ 22603190 (+) False XLOC_009873
TCONS_00019698 mRNA downstream 226514 22587733 ~ 22603354 (+) True XLOC_009873
TCONS_00019700 mRNA downstream 257401 22618620 ~ 22678294 (+) False XLOC_009874
TCONS_00019699 mRNA downstream 257401 22618620 ~ 22678294 (+) False XLOC_009874
TCONS_00019701 mRNA downstream 288636 22649855 ~ 22673423 (+) False XLOC_009874
TCONS_00019682 other upstream 641834 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 1432029 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 1840648 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 2041238 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 2174685 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019718 other downstream 1036582 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 1246012 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 1476701 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 1599652 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 2154873 24516092 ~ 24517092 (+) False XLOC_009904

Expression Profile


//