RNA id: TU501873


Basic Information

Item Value
RNA id TU501873
length 672
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G437253
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 11124610 ~ 11125281 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAGGTCATACTTCATATCGAAGTCATTGAGTTTTTTTTATTTTTTTATTCATAGTTATGTGGTCAAAATATTTCCCTGAATTTGAGACAAAATGGCTTTTTTCATACAGTTCATTTGTATTTTGCACCTTTCTTTTGTAAAATACATTTTACTGATATTTACATTTGTTTTCTTTCTAAAAACTGTACAAAATTTATCTTTGATCACAAAACTGTACAAATCAGAAGTTTGCTGTTGGGTACGGACTGACGGGTTAACAATCGGGCCTCTGGCAACTCTCTGTTACTGCAACAACATAAAAATCATAAAGGAACTACGTCTAATGTGACATCAGGAACAGCACAGGAAACACGCTCACAATGACACACGTCAGCTCTGACATAGATACAACAGATCAATAAATTAAAAAAAGACAAGATGACAAAAATGAGGTTTGGTGAAAATGGTACAGTACGCTGCAATGAGTTGGTCTTTCTGGATGATTTATAATAGATTTGATACATTTTATATGTACCAGAAATATCATAAGAATTTTTTTATTCTATATAAAGACAAATAATTAAGACAATTTTTAGAACCATTAAGATTACAGATTGCTATTTGTGCATTATAACCAGTAAGCAGATTTTTCTCCGAAACAGACATCATGAAAATAAATGTCACAATGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501863 lncRNA downstream 62637 11061638 ~ 11061973 (-) True G437247
TU501862 lncRNA downstream 70501 11053713 ~ 11054109 (-) True G437246
TU501861 lncRNA downstream 76141 11043948 ~ 11048469 (-) True G437245
TU501857 lncRNA downstream 101339 11023044 ~ 11023271 (-) True G437242
TU501853 lncRNA downstream 111005 11013390 ~ 11013605 (-) True G437238
TU501893 lncRNA upstream 19496 11144777 ~ 11146153 (-) True G437266
TU501896 lncRNA upstream 58094 11183375 ~ 11184004 (-) True G437269
TU501910 lncRNA upstream 141209 11266490 ~ 11266804 (-) True G437282
TU501875 lncRNA upstream 147556 11272837 ~ 11274008 (-) True G437255
TU501935 lncRNA upstream 234248 11359529 ~ 11363969 (-) True G437301
CI01000306_10827722_10850649.mRNA mRNA downstream 273613 10827712 ~ 10850997 (-) True CI01000306_10827722_10850649
CI01000306_10760753_10773695.mRNA mRNA downstream 349657 10760404 ~ 10774953 (-) True CI01000306_10760753_10773695
CI01000306_10742315_10746542.mRNA mRNA downstream 378068 10741936 ~ 10746542 (-) True CI01000306_10742315_10746542
CI01000306_10589795_10591581.mRNA mRNA downstream 533029 10589670 ~ 10591581 (-) True CI01000306_10589795_10591581
CI01000306_10551500_10554962.mRNA mRNA downstream 569429 10551386 ~ 10555181 (-) True CI01000306_10551500_10554962
CI01000306_11125557_11128262.mRNA mRNA upstream 271 11125552 ~ 11128322 (-) True CI01000306_11125557_11128262
CI01000306_11156216_11159574.mRNA mRNA upstream 30126 11155407 ~ 11159574 (-) True CI01000306_11156216_11159574
CI01000306_11163918_11174225.mRNA mRNA upstream 38504 11163785 ~ 11174225 (-) True CI01000306_11163918_11174225
CI01000306_11177715_11179047.mRNA mRNA upstream 51012 11176293 ~ 11179135 (-) True CI01000306_11177715_11179047
CI01000306_11196371_11200955.mRNA mRNA upstream 70757 11196038 ~ 11201075 (-) True CI01000306_11196371_11200955
TU501193 other downstream 1099235 10022148 ~ 10025375 (-) True G436643
TU501173 other downstream 1288287 9835025 ~ 9836323 (-) True G436626
TU500988 other downstream 1452834 9656279 ~ 9671776 (-) True G436446
TU498677 other downstream 4257674 6866656 ~ 6866936 (-) True G434338
TU498395 other downstream 4672359 6437406 ~ 6452251 (-) True G434086

Expression Profile