RNA id: TCONS_00021953


Basic Information

Item Value
RNA id TCONS_00021953
length 456
lncRNA type sense_over
GC content 0.45
exon number 2
gene id XLOC_009987
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 28270015 ~ 28371330 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCGAACTTGAGGTGGAGGCACGTAGTAAATAAACTGAATGGACCACAGAGCGGTCTGCTTTACCCATAACGAGCAATTTTCATtgattttttcctattttttctaGGTGTTGTGGAGTGCAACTGACAGCCGTTGGCTACTCTTAGAATTGGCTGTCGGAGGAACGAGCTAAACGTTTGTTTTGGACGTTAGAAAACGTAGCAAGCGGTTAAAACCGTCTGCTGAGCTGCTGAGTGAGTTTCTTCACTGAGGACATACCAGGCCTGTCCAGTTAACGTTAAACGGACAGAATAGAAACCTTGAATTAAGGTACCCAGTGTCGGATAACCCACAAGACAGCATTCATTTCAGGTACAAATTGTATGAGCTGTTGTGCTGTGCTGTCGTATTCAAAGGCTAGCGTTCATTTAGGGTTTTGGCGCGAGATTATTCATTGCTGACGGGACAGTTTGTGA

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0007276 gamete generation biological_process
GO:1905879 regulation of oogenesis biological_process
GO:0048609 multicellular organismal reproductive process biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0048017 inositol lipid-mediated signaling biological_process
GO:0014065 phosphatidylinositol 3-kinase signaling biological_process
GO:0032504 multicellular organism reproduction biological_process
GO:0052744 phosphatidylinositol monophosphate phosphatase activity molecular_function
GO:0004438 phosphatidylinositol-3-phosphatase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021952 lncRNA upstream 219987 28049554 ~ 28050028 (+) True XLOC_009986
TCONS_00021720 lncRNA upstream 396648 27839927 ~ 27873367 (+) True XLOC_009984
TCONS_00019876 lncRNA upstream 698664 27569837 ~ 27571351 (+) True XLOC_009980
TCONS_00021951 lncRNA upstream 713226 27547495 ~ 27556789 (+) False XLOC_009979
TCONS_00019874 lncRNA upstream 713226 27555031 ~ 27556789 (+) True XLOC_009979
TCONS_00021954 lncRNA downstream 389000 28660395 ~ 28667333 (+) False XLOC_009994
TCONS_00021955 lncRNA downstream 389008 28660403 ~ 28663860 (+) True XLOC_009994
TCONS_00019908 lncRNA downstream 753906 29025301 ~ 29029007 (+) False XLOC_010003
TCONS_00019909 lncRNA downstream 753908 29025303 ~ 29025882 (+) True XLOC_010003
TCONS_00021956 lncRNA downstream 939967 29211362 ~ 29227112 (+) False XLOC_010005
TCONS_00019881 mRNA upstream 271159 27957808 ~ 27998856 (+) True XLOC_009985
TCONS_00019880 mRNA upstream 647832 27614989 ~ 27622183 (+) True XLOC_009983
TCONS_00019878 mRNA upstream 660843 27603739 ~ 27609172 (+) False XLOC_009982
TCONS_00019879 mRNA upstream 660843 27603748 ~ 27609172 (+) True XLOC_009982
TCONS_00019877 mRNA upstream 667503 27593698 ~ 27602512 (+) True XLOC_009981
TCONS_00019883 mRNA downstream 112363 28383758 ~ 28512860 (+) False XLOC_009988
TCONS_00019884 mRNA downstream 112397 28383792 ~ 28451338 (+) True XLOC_009988
TCONS_00019887 mRNA downstream 275762 28547157 ~ 28574789 (+) False XLOC_009990
TCONS_00019886 mRNA downstream 275762 28547157 ~ 28574789 (+) True XLOC_009990
TCONS_00019888 mRNA downstream 306957 28578352 ~ 28591541 (+) False XLOC_009991
TCONS_00019873 other upstream 714775 27549842 ~ 27555240 (+) False XLOC_009979
TCONS_00019866 other upstream 714879 27543308 ~ 27555136 (+) False XLOC_009979
TCONS_00019885 other downstream 116651 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019905 other downstream 745541 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019912 other downstream 944879 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019938 other downstream 1731357 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019939 other downstream 1809148 30080543 ~ 30080661 (+) True XLOC_010021

Expression Profile

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