RNA id: TCONS_00019882


Basic Information

Item Value
RNA id TCONS_00019882
length 2796
RNA type mRNA
GC content 0.45
exon number 15
gene id XLOC_009987
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 28270015 ~ 28371330 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAGTAAATAAACTGAATGGACCACAGAGCGGTCTGCTTTACCCATAACGAGCAATTTTCATtgattttttcctattttttctaGGTGTTGTGGAGTGCAACTGACAGCCGTTGGCTACTCTTAGAATTGGCTGTCGGAGGAACGAGCTAAACGTTTGTTTTGGACGTTAGAAAACGTAGCAAGCGGTTAAAACCGTCTGCTGAGCTGCTGAGTGAGTTTCTTCACTGAGGACATACCAGGCCTGTCCAGTTAACGTTAAACGGACAGAATAGAAACCTTGAATTAAGGTACCCAGTGTCGGATAACCCACAAGACAGCATTCATTTCAGGTACAAATTGTATGAGCTGTTGTGCTGTGCTGTCGTATTCAAAGGCTAGCGTTCATTTAGGGTTTTGGCGCGAGATTATTCATTGCTGACGGGACAGTTTACGCATCGGTAGCGCATCCGTGGCAAATGCCACCTGCTCACCAAAACCACATTTGTAAGATTCAGCGGAATACAGAAGCAGGCCAGGAGGAGTGCGCTAGCCACGTCGAGTACACTACAGCGGTTAGCTGTCACAAGGCTGTCCACTGGTCTTGATGCATGCTTTGAGTCAACATTAAAGACGACCGAGAGCAAAAATGTCAGATACGAATAAAGAAGTGGTGGATCTGGTGTGGGGCAGACCCAGCGGTGGAGGAGTTCCTGCATCCCTGTTCCGCAGGTGGTCTCAAGGCTTTGTGTTCAGTGAGACTGAGCGTTCTGCGCTGGAGCAGTTTGAAGGTGGACCATGTGCTGTCATTGCACCTGTGCAGGCTTTCCTGTTGAAGAATATTCTGTTTAACACTGAAGGATTGAACTGGAAAGATATCTCAGAGGAAGAGCAGCGGACAGTCCTGTGTTCTACCCTCAGTGAGATCCTGGAGTTGGCCTGCCTCAATAAGTCACAGGCCTTTCACCTAGTCACCTGGCCTCACGCTAAAACCACAGACAACAGCGACATCACAGACAGCCACCCAGAGCCCGAGTCCAGCCAGCCTACTGACACACCAActGCTTTGGCTACAGAGGAGCTTGGATTTGAGAGGTTTCACAGTGTCATACAGAAGAGGACTCTCAGGACAGTTGCAGAGCTGAAAGAGGCAGTCCTGTCACTGTACGACACCTGGAAGAATAAGTTTGGAGTTCTGCTGTTCCTGTACTCTGTCATACTTACAAAGGGGATTGAAAACATAAAGAATGAGATAGAAGACACCACTGAACCTCTGATCGACCCTGTTTATGGCCACGGCAGCCAGAGTCTAATTAACCTGCTGGTGACTGGTCATGCTGTGTCTAACGTGTGGGACGGCGATAGAGAATGTTCTGGAATGAAGCTTCACGGTATTTATCAGCAGGCTTCTGTTGGTTTCCTCACACTAATGGAGTCACTGCGCTATTGTAAGGTTGGCGCATTTCTCAAATCTCCAAAGTTCCCTATTTGGATCCTTGGCAGCGAAACTCACCTCTCAGTATTCTTCACTAAGGAAATGGCTTTGGTTGCTCCTGAGTCTGCGTCAGAACAGGCCAGAAGAGTTTTCCAGACATTTGACCCGGAagATAATGGGTTCATTCCAGACACACTTCTTGAAGATGTAATGAAAGCCTTGGATCTCGTCTCTGAGCCAGACTATGTGAATCTGATGAAGAGTAAGCTGGATCCAGAGGGGTTGGGTATTATTCTGTTGGGTCAGTTTCTGTTGGAGTTCTTCCCTGatcagGATTCTGTGATCCCAGATTCATTTCCTGTGTATCACTATAATGGCCTGAAGCAGTCCAACCATAATGAGAAGGTGAGTTACGTTGAGGGGACAGCTTTGGTCATGGGTTTTGAGGATCCCATGGTACGTACAGACGACACCCCAGTCAAACGCTGTCTACAGACCAAATGGCCCTACATCGAGCTCCTGTGGACCACAGAAAGGTCACCATCCCTCAATTAACCTTTGTCTCTGTCACCTTTCACCTATACCAACCTCTGGCTGCACAGCCCGAAGACTTCAGGAAAGCTCAGAGGACTCCTCACTCTCTCTGCACTACATTCTAGGAGGCCAAAACAGGCCTGAAGTTCAACTGAGAGACGATGCTCTTCGCCTGGCACTCACACAAAGCCTcttgtttgctttttttctgcTTGATTATTGAGCTAATTCTGTGTTTAAAGTCCTGGGGTTGAACAAACACACTTTGTTGCTGTTTGGGAATTATGTTTTCTCTTTTGCCATCTGTTGTGTGTACCAAATGTATTTGCTTTTGCAGGTGttcatattatttttgttaactttCTACATGAGTTTGTTTACTGGTTTGAAATGATAAATCTTTAAACTAGCACATCGACTGTGATGATCTTATGAGTAATTTATGGaattgctaatatatatattttttatttgaggtTTCGTTGTTAGCAGTTGTGAATATTTAAGGGATCGTTTGATTGACCAAAGCTTCTGGCTGGACATAAAGTATTAATGTTTGTCAGTGGTCAGCTGAGGAGTTGTCATGTTCTGCAGCGCCCAGCCATCAGAGGAATTGTGTTTAGACAGGTTTACAAAAGAATGCACTACAACCCCATGTTGGGCACCAAACAACAGTGGGAGAATAGGGCAATTTTAGTATTTAAACTTTGAAGAAAAAACCCTCCAGGAGGGACTCTGCAATGACACTATGATTCTCTGCATGAGAGAGAAGCAGAATAACACACAAACGCTCACCGTTTATTTATTCTGATCCTGATGGTTCACTAAATTAAACACTTTTGTTCTTCAA

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0007276 gamete generation biological_process
GO:1905879 regulation of oogenesis biological_process
GO:0048609 multicellular organismal reproductive process biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0048017 inositol lipid-mediated signaling biological_process
GO:0014065 phosphatidylinositol 3-kinase signaling biological_process
GO:0032504 multicellular organism reproduction biological_process
GO:0052744 phosphatidylinositol monophosphate phosphatase activity molecular_function
GO:0004438 phosphatidylinositol-3-phosphatase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-061110-13 Predicted to enable Lys48-specific deubiquitinase activity. Predicted to act upstream of or within apoptotic process and protein K48-linked deubiquitination. Predicted to be located in nucleus. Orthologous to human MINDY3 (MINDY lysine 48 deubiquitinase 3).

Ensembl:

ensembl_id ENSDART00000059035

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021952 lncRNA upstream 220009 28049554 ~ 28050028 (+) True XLOC_009986
TCONS_00021720 lncRNA upstream 396670 27839927 ~ 27873367 (+) True XLOC_009984
TCONS_00019876 lncRNA upstream 698686 27569837 ~ 27571351 (+) True XLOC_009980
TCONS_00021951 lncRNA upstream 713248 27547495 ~ 27556789 (+) False XLOC_009979
TCONS_00019874 lncRNA upstream 713248 27555031 ~ 27556789 (+) True XLOC_009979
TCONS_00021954 lncRNA downstream 289065 28660395 ~ 28667333 (+) False XLOC_009994
TCONS_00021955 lncRNA downstream 289073 28660403 ~ 28663860 (+) True XLOC_009994
TCONS_00019908 lncRNA downstream 653971 29025301 ~ 29029007 (+) False XLOC_010003
TCONS_00019909 lncRNA downstream 653973 29025303 ~ 29025882 (+) True XLOC_010003
TCONS_00021956 lncRNA downstream 840032 29211362 ~ 29227112 (+) False XLOC_010005
TCONS_00019881 mRNA upstream 271181 27957808 ~ 27998856 (+) True XLOC_009985
TCONS_00019880 mRNA upstream 647854 27614989 ~ 27622183 (+) True XLOC_009983
TCONS_00019878 mRNA upstream 660865 27603739 ~ 27609172 (+) False XLOC_009982
TCONS_00019879 mRNA upstream 660865 27603748 ~ 27609172 (+) True XLOC_009982
TCONS_00019877 mRNA upstream 667525 27593698 ~ 27602512 (+) True XLOC_009981
TCONS_00019883 mRNA downstream 12428 28383758 ~ 28512860 (+) False XLOC_009988
TCONS_00019884 mRNA downstream 12462 28383792 ~ 28451338 (+) True XLOC_009988
TCONS_00019887 mRNA downstream 175827 28547157 ~ 28574789 (+) False XLOC_009990
TCONS_00019886 mRNA downstream 175827 28547157 ~ 28574789 (+) True XLOC_009990
TCONS_00019888 mRNA downstream 207022 28578352 ~ 28591541 (+) False XLOC_009991
TCONS_00019873 other upstream 714797 27549842 ~ 27555240 (+) False XLOC_009979
TCONS_00019866 other upstream 714901 27543308 ~ 27555136 (+) False XLOC_009979
TCONS_00019885 other downstream 16716 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019905 other downstream 645606 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019912 other downstream 844944 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019938 other downstream 1631422 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019939 other downstream 1709213 30080543 ~ 30080661 (+) True XLOC_010021

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_07292677_07331000.mRNA True 1462 mRNA 0.49 16 CI01000027 7292677 ~ 7331032 (+)
bowfin (Amia calva) AMCG00021502 True 1338 mRNA 0.59 15 CM030130.1 19587219 ~ 19610896 (-)