RNA id: TCONS_00019886


Basic Information

Item Value
RNA id TCONS_00019886
length 2469
RNA type mRNA
GC content 0.54
exon number 9
gene id XLOC_009990
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 28547157 ~ 28574789 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaaGTGGTGCTGAAGGTTCACCTGAGTGACTCCAGCACACATCAGCCTCTGTCTGGTGTCACGGTGGAGGTCTTCACCAACCACACTCCTGTTTCCTCTGACGTCTCTGGTGCAGACGGCAATGCCTTCATCCGGTTTCCCTATCGACTCGTTGACCTGCTTGTAGTCACCGCTACCAAGCGTGGTTATGTGCCCAACTCCGTCCCATGGAGACCCAGCAGGCTGCCTGtgtTCTCATCTCTCAGTCTGGATCTGCTTCCTGAAAGAGCTGCTACTCTGATGGTTTATGAAGATGTGGTGGAGATTGTCTCTGGATTTCAAGgccCAAAGTTGCAGCCGCGGGTCCAGTTCCAGAGAAGAGCATTGAGTCTTCCTTCTAATGCAACCTACACCAACCTGACGGCCTTCCTCACTGTGAGCAGCTCCACACAGGACACACAGTACTTTCCATACCTGCAGGGGCTTCATCCAAACTTCACAGGCAGTGAGCGAAAGTTTGAGCTGACTCCTATAGCTGCACTCAGTGTCCATCTTCTGGGCAGTGATGGGGTGGAGCTTCACGTCAGCGAGCCAATCAGTGTGAGCGTCCCTCTTCCTGCAAACAGTGGCTTAAAAGAGAATGATCACATTCCGGCATGGAGGTTTGACCCTAAATATGGAAGGTGGACAAGGCcaaatCTTGGATACGTCCAGAGAGAGGGCAAGCAGTTGACTCTCACGTACATTGCCCCTCAGCTTGGCTATTGGGTCGCAGCAATGTCTCCTATCAACACAGGTCCGGTGGTAGCAAAGGACATTAGCACTTACCACACAGTCTTCCTGCTGGTCATACTAGGGGGAATGGCCCTCATACTGCTGTTCCTGCTCTGCCTGCTGCTCTACTATTGCAGgaggaagTGTACCCGTTTGCGGCCTGCTCACCGGAAGTTCACATTATCCTCAGCTTTGGATGGCTCTAAACGAGACCAGGCTACTTCCATGTCCCACCTTAACCTCATCAATGAGACTCACCTTGACCAGAACGGGGCAGAGCCGGACATGCACACACCTATGCTTAAACCCACTCCCTACGACTCCTCCACCAATGAGCTTGCGACTTCGCGTGGCGAGCTTCACAGCCGAGGATCCAACCACTACAAACACTCAGTTGAAATATTTCCTCTCAAATCGGCTTGCTCAAACAATCCCTCTGAAGGTTATGATTCCGCTGCTGGACGAGGGGAATACCGACGGAGCTATACGTCCATTACGACTTCGTCCGTCCATCCCCTCCACATGTCTGTCTCCTCCTCTTCGCCTCATACCTTGCATCACACCACCTCTGCAGGACGTCTCTCTTCGGAGAGTAAATCAAGCTTGCGGGATCAACGTCTGTCTCCTGTTTCGGCCGCAAGTCCTGCCGGATCTCCAGAACGGGAGCAAGGAATTGAGCGACGGACAACTGATTACTTGTTGTCCCGCTCTGTAGACCATCTAGAGCGTCCTGCCCCACTTCCCCGACCTGGAGCCCTGCTCTGCTGTACCTCCGAACTTATAGTGAATAAAGGGGAAGAAACCTACCGCAAGGCTCGCCCCACCCTCGTCATCCCAGCTCACTACATGAGACTTCCAGGGACGCACCCTCTGTCTGGCCAGGCACTGCTGTTGCAGTCAGATGTACAGAGCGAATTGGAAACCATTCAGGCGGAGCTCAGCGCATGCCACCAGCCCCAGGGTCAGGTTCTGCACAAGGGAGAGCAGGAAGGAGGGACACAAGGGATGGGGGAAGACCAGGGTGGAGGAGCTGATGAGTGGACACTGCAGACAGCAGCTCTTCCTGCTGATCTCTCCATCCCCAATTCTCTCAGTCAGGCAGGACTGGATGTGGTGCAGATGAACGGAGAAGATCAGCTTCTGGCTGAAAAGACTTTAATGGAGCTCAGGGGTGGGAAACCGCTCCCTCACCCCAGGGCTTGGTTCGTTTCTCTGGACGGACGCTCCAACGCGCACATCCGCCATTCCTACATTGACTTGCAAAGGGCTGGATGCAACAGCAGTTGTGTCGGAAGCAACGACGCCAGTCTGGACTCTGGTGTTGATATGAGCGACGTCACACCGGGGCGGCGTGTTCGTGATAAAGTTGTTGTTAAAACTGAACCTGAGGCTCAACCTGCAGCACCTGTGGTTGGACATACACCGGTATTGATTGTAGAGGATTCAAATGCCGATGAGGAGAACAGCGGTAGCCCCACGCCAGTCTGCAGCCCTGAAATTCCTTCACCACCTCCTCTACCTGAGCCTGTAGTTGAAACTTCAGAGGATACAGGGATAGATGGTGAGGTTTTTAGGACTGAGGAGACTCCAGTACACATGAACAGCAGCCGGCCAGACAAACTGCTCGTCCCTGATGACGGAGGTGAAGACGAGAACAAGAAAAGTCCATGGCAGAAACGAGAGGAGCGACCACTACTGGCCTTTAACCTAAAATGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061208-1 Predicted to be involved in regulation of cell shape and stress fiber assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human FAM171A1 (family with sequence similarity 171 member A1).

Ensembl:

ensembl_id ENSDART00000109450

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021953 lncRNA upstream 275762 28270015 ~ 28271395 (+) False XLOC_009987
TCONS_00021952 lncRNA upstream 497129 28049554 ~ 28050028 (+) True XLOC_009986
TCONS_00021720 lncRNA upstream 673790 27839927 ~ 27873367 (+) True XLOC_009984
TCONS_00019876 lncRNA upstream 975806 27569837 ~ 27571351 (+) True XLOC_009980
TCONS_00019874 lncRNA upstream 990368 27555031 ~ 27556789 (+) True XLOC_009979
TCONS_00021954 lncRNA downstream 85606 28660395 ~ 28667333 (+) False XLOC_009994
TCONS_00021955 lncRNA downstream 85614 28660403 ~ 28663860 (+) True XLOC_009994
TCONS_00019908 lncRNA downstream 450512 29025301 ~ 29029007 (+) False XLOC_010003
TCONS_00019909 lncRNA downstream 450514 29025303 ~ 29025882 (+) True XLOC_010003
TCONS_00021956 lncRNA downstream 636573 29211362 ~ 29227112 (+) False XLOC_010005
TCONS_00019883 mRNA upstream 34297 28383758 ~ 28512860 (+) False XLOC_009988
TCONS_00019884 mRNA upstream 95819 28383792 ~ 28451338 (+) True XLOC_009988
TCONS_00019882 mRNA upstream 175827 28270037 ~ 28371330 (+) True XLOC_009987
TCONS_00019881 mRNA upstream 548301 27957808 ~ 27998856 (+) True XLOC_009985
TCONS_00019880 mRNA upstream 924974 27614989 ~ 27622183 (+) True XLOC_009983
TCONS_00019888 mRNA downstream 3563 28578352 ~ 28591541 (+) False XLOC_009991
TCONS_00019889 mRNA downstream 3859 28578648 ~ 28579313 (+) True XLOC_009991
TCONS_00019890 mRNA downstream 21766 28596555 ~ 28599328 (+) False XLOC_009992
TCONS_00019891 mRNA downstream 21779 28596568 ~ 28598524 (+) True XLOC_009992
TCONS_00019892 mRNA downstream 27185 28601974 ~ 28627568 (+) False XLOC_009993
TCONS_00019885 other upstream 158994 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019873 other upstream 991917 27549842 ~ 27555240 (+) False XLOC_009979
TCONS_00019869 other upstream 992055 27543582 ~ 27555102 (+) False XLOC_009979
TCONS_00019867 other upstream 992108 27543497 ~ 27555049 (+) False XLOC_009979
TCONS_00019905 other downstream 442147 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019912 other downstream 641485 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019938 other downstream 1427963 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019939 other downstream 1505754 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019951 other downstream 2395712 30970501 ~ 30971157 (+) True XLOC_010029

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_07432479_07451012.mRNA True 3681 mRNA 0.50 8 CI01000027 7432479 ~ 7452012 (+)